"
Team:Newcastle/CellML
From 2009.igem.org
TubularWorld (Talk | contribs) |
TubularWorld (Talk | contribs) |
||
| Line 3: | Line 3: | ||
{{:Team:Newcastle/Left}} | {{:Team:Newcastle/Left}} | ||
= CellML = | = CellML = | ||
| - | '''CellML''' is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language, and is being developed by the Auckland Bioengineering Institute at the University of Auckland. | + | '''CellML''' is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language, and is being developed by the Auckland Bioengineering Institute at the University of Auckland. To develop models in CellML we used the COR and OpenCell programs. |
The Newcastle team used CellML for their Gold award winning project last year, so we have decided to once again use this technology. | The Newcastle team used CellML for their Gold award winning project last year, so we have decided to once again use this technology. | ||
| Line 22: | Line 22: | ||
** [http://www.cellml.org/about/news/newcastle-university-team-wins-gold-in-igem-synthetic-biology-competition-cellml-technology-plays-important-role An article about last year's CellML usage] | ** [http://www.cellml.org/about/news/newcastle-university-team-wins-gold-in-igem-synthetic-biology-competition-cellml-technology-plays-important-role An article about last year's CellML usage] | ||
* [http://nsr.bioeng.washington.edu/jsim/ JSim] | * [http://nsr.bioeng.washington.edu/jsim/ JSim] | ||
| + | * [http://cor.physiol.ox.ac.uk/ COR] | ||
| + | * [http://www.cellml.org/tools/opencell/ OpenCell] | ||
{{:Team:Newcastle/Footer}} | {{:Team:Newcastle/Footer}} | ||
{{:Team:Newcastle/Right}} | {{:Team:Newcastle/Right}} | ||
Revision as of 00:00, 21 October 2009
Project
Sub-projects
Wet Lab
Meetings
Planning
Links
Contents |
CellML
CellML is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language, and is being developed by the Auckland Bioengineering Institute at the University of Auckland. To develop models in CellML we used the COR and OpenCell programs.
The Newcastle team used CellML for their Gold award winning project last year, so we have decided to once again use this technology.
JSim
To bridge the gap between agent based models (Java) and cellular models (CellML), the Newcastle team are using a software product called JSim, developed by the University of Washington.
Models developed
The following are models which we have developed using CellML:
In addition to CellML, JSim has been used to access models written in CellML in:
External links
- [http://www.cellml.org/ CellML.org]
- [http://www.cellml.org/about/news/newcastle-university-team-wins-gold-in-igem-synthetic-biology-competition-cellml-technology-plays-important-role An article about last year's CellML usage]
- [http://nsr.bioeng.washington.edu/jsim/ JSim]
- [http://cor.physiol.ox.ac.uk/ COR]
- [http://www.cellml.org/tools/opencell/ OpenCell]
News
Events
- 20 – 21 June 2009 - Europe workshop (London)
- 23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
- 23 October Practice Presentation (Newcastle)
- 23 October T-shirts are ready
- 27 October Practice Presentation (Sunderland)
- 27 October Poster is ready
- 30 October – 2 November 2009 - Jamboree (Boston)
Social Net
- Newcastle iGEM Twitter
- [http://www.facebook.com/home.php#/group.php?gid=131709337641 Newcastle on Facebook]
- [http://www.youtube.com/user/newcastle2009igem Newcastle Youtube Channel]
