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Team:TUDelft/Modeling
From 2009.igem.org
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<br> | <br> | ||
='''Delay Device'''= | ='''Delay Device'''= | ||
| - | + | [[Image:Negative Feedforward.jpg]]<br> | |
| - | [[Image: | + | Figure 1: Negative Feedforward model<br> |
| + | [[Image:Riboregulator_delay.jpg]]<br> | ||
| + | Figure 2: Riboregulator model<br> | ||
==Mathematical Modeling== | ==Mathematical Modeling== | ||
| - | The model shown above can be expressed with the following set of ODEs (ordinary differential equations) | + | The Negative Feedforward model shown above can be expressed with the following set of ODEs (ordinary differential equations):<br> |
| - | + | [[Image:negative_feedforward_ODEs_2.jpg]]<br> | |
| + | The Riboregulator model shown above can be expressed with the following set of ODEs:<br> | ||
| + | [[Image:riboregulator_ODEs.jpg]]<br> | ||
| + | We would like to give credit to the [https://2008.igem.org/Team:Bologna/Modeling Bologna '08 team] and [https://2008.igem.org/Team:UNIPV-Pavia/Modeling UNIPV-Pavia '08 team], who's project was useful in determining our own equations:<br> | ||
The symbols in this system of equations are found in the table below:<br> | The symbols in this system of equations are found in the table below:<br> | ||
| - | [[Image: | + | [[Image:symbols_table.jpg]]<br> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
='''Conjugation'''= | ='''Conjugation'''= | ||
[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility] | [http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility] | ||
Revision as of 12:03, 20 July 2009
Delay Device
Figure 1: Negative Feedforward model
Figure 2: Riboregulator model
Mathematical Modeling
The Negative Feedforward model shown above can be expressed with the following set of ODEs (ordinary differential equations):
The Riboregulator model shown above can be expressed with the following set of ODEs:
We would like to give credit to the Bologna '08 team and UNIPV-Pavia '08 team, who's project was useful in determining our own equations:
The symbols in this system of equations are found in the table below:
Conjugation
[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility]
