Team:Groningen/Modelling/Characterization
From 2009.igem.org
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1111.23287671233e-6,1229.58904109589e-6], | 1111.23287671233e-6,1229.58904109589e-6], | ||
time:[60,600,1200,2400,3600]}, | time:[60,600,1200,2400,3600]}, | ||
- | {constants:{Vc:0.004545455,Vs:(1-0.004545455),pro:0,ars2T:0},AsT:0.467154987e-6, | + | {constants:{Vc:(0.004545455/0.3),Vs:(1-(0.004545455/0.3)),pro:0,ars2T:0},AsT:0.467154987e-6, |
AsinT:[10.49961532e-6,16.62049351e-6,19.44416512e-6,23.07460003e-6, | AsinT:[10.49961532e-6,16.62049351e-6,19.44416512e-6,23.07460003e-6, | ||
29.40009211e-6,32.06299566e-6], | 29.40009211e-6,32.06299566e-6], | ||
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// Mutate | // Mutate | ||
- | var factor = | + | var factor = 1+0.01*(1-Math.exp(-Math.random())); |
if (Math.random()<0.5+Math.atan(dc[vn])/Math.PI) { | if (Math.random()<0.5+Math.atan(dc[vn])/Math.PI) { | ||
factor = 1 / factor; | factor = 1 / factor; | ||
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// Set up iteration | // Set up iteration | ||
- | var numiter = | + | var numiter = 100000000; |
var iter = 0; | var iter = 0; | ||
var timer = setInterval(function(){ | var timer = setInterval(function(){ |
Revision as of 12:33, 1 October 2009
[http://2009.igem.org/Team:Groningen http://2009.igem.org/wiki/images/f/f1/Igemhomelogo.png]
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- Modelling
- DetailedModel
- Characterization
- Downloads
TODO: Talk about the devices we have and in what way we want to characterize them.
Uptake measurements
Time (min) | ||||||
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0 | 10 | 20 | 40 | 60 | ||
As(III)exT(0) (µM) | 0 | x | ||||
10 | x | x | x | x | x | |
20 | x | |||||
50 | x | |||||
100 | x |
To efficiently look at both time and concentration dependent processes we took samples as in the table on the right. Below we list all results, which have been used for fitting all necessary parameters.
TODO: List results. Take conversion from nmol/mg and mg/ml to µM and Vc/Vs into account.
best | cur | gradient | solved | |
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v5/K5 | ||||
v5 | ||||
K5 | ||||
k8/K7 | ||||
k8 | ||||
K7 | ||||
tauBbeta4 | ||||
tauB | ||||
beta4 | ||||
E |
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