Team:TUDelft/Modeling

From 2009.igem.org

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[[Image:Negative_feedback_2.jpg]]
[[Image:Negative_feedback_2.jpg]]
==Mathematical Modeling==
==Mathematical Modeling==
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[[Image:negative_feedforward_ODEs.jpg]]
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The model shown above can be expressed with the following set of ODEs (ordinary differential equations) (thanks to the help of previous iGEM projects by [https://2008.igem.org/Team:Bologna/Modeling Bologna '08 team] and [https://2008.igem.org/Team:UNIPV-Pavia/Modeling UNIPV-Pavia '08 team]:<br>
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[[Image:negative_feedforward_ODEs.jpg]]<br>
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The symbols in this system of equations are found in the table below:<br>
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[[IImage:symbols_table_NFF.jpg]]<br>
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==Riboregulator==
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='''Conjugation'''=
='''Conjugation'''=
[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility]
[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility]

Revision as of 09:22, 20 July 2009


Delay Device

Negative Feedforward system

Negative feedback 2.jpg

Mathematical Modeling

The model shown above can be expressed with the following set of ODEs (ordinary differential equations) (thanks to the help of previous iGEM projects by Bologna '08 team and UNIPV-Pavia '08 team:
Negative feedforward ODEs.jpg
The symbols in this system of equations are found in the table below:
IImage:symbols_table_NFF.jpg

Riboregulator

Conjugation

[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility]