Team:Groningen/Modelling/Characterization
From 2009.igem.org
(Difference between revisions)
(Added a plot of the Meng2004 fit.) |
m (Refactored refreshing of graphs.) |
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var E = computeCost(c,experiments); | var E = computeCost(c,experiments); | ||
var cBest = c, EBest = E; | var cBest = c, EBest = E; | ||
+ | for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | ||
// Show initial situation | // Show initial situation | ||
showOutputs('cur',E,c,dc); | showOutputs('cur',E,c,dc); | ||
showOutputs('',EBest,cBest); | showOutputs('',EBest,cBest); | ||
- | + | refreshGraphs(); | |
- | + | ||
// Set up iteration | // Set up iteration | ||
Line 269: | Line 269: | ||
cBest = cNew; | cBest = cNew; | ||
EBest = ENew; | EBest = ENew; | ||
- | |||
for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | ||
- | + | showOutputs('',EBest,cBest); | |
+ | refreshGraphs(); | ||
} | } | ||
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} | } | ||
},1); | },1); | ||
+ | } | ||
+ | |||
+ | function refreshGraphs() { | ||
+ | document.getElementById('Meng2004Graph').refresh(); | ||
} | } | ||
Revision as of 10:49, 5 October 2009
[http://2009.igem.org/Team:Groningen http://2009.igem.org/wiki/images/f/f1/Igemhomelogo.png]
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- Modelling
- DetailedModel
- Characterization
- Downloads
TODO: Talk about the devices we have and in what way we want to characterize them.
Uptake measurements
Time (min) | ||||||
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0 | 10 | 20 | 40 | 60 | ||
As(III)exT(0) (µM) | 0 | x | ||||
10 | x | x | x | x | x | |
20 | x | |||||
50 | x | |||||
100 | x |
To efficiently look at both time and concentration dependent processes we took samples as in the table on the right. Below we list all results, which have been used for fitting all necessary parameters.
TODO: List results. Take conversion from nmol/mg and mg/ml to µM and Vc/Vs into account.
best | cur | gradient | solved | |
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v5/K5 | ||||
v5 | ||||
K5 | ||||
k8/K7 | ||||
k8 | ||||
K7 | ||||
tauBbeta4 | ||||
tauB | ||||
beta4 | ||||
tauR | ||||
beta1 | ||||
E |
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