Team:Groningen/Modelling/Downloads

From 2009.igem.org

Downloads of Modelling data/code

• [http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Raw%20Data/ All our raw data from papers] is available in SVN in a [http://code.google.com/p/igemgroningen/ Google Code project].
• [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/Heavy%20Metal%20Scavenger.xml An SBML version of our model.] (Not a complete match, because our model apparently needs a slightly too complex DAE.)
• [http://code.google.com/p/igemgroningen/source/browse/trunk/# A patch to Inkscape's measure.inx/.py to be able to measure in nanometers.]
• [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/ Miscellaneous other stuff regarding our model.] (Early versions, Mathematica notebooks for computing certain parameters and so on.)

Downloads of Biological raw data

• Promoter test of J61002-ArsR promoter, under induction of 100uM NaAsO2.

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindDlQOEJCdUpISTU4M2cweE5PT3p3MVE&hl=en here] (GoogleDocs spreadsheet)

• Arsenite uptake assay, first data set

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindE9OSjFpZzdGU2 here] (GoogleDocs spreadsheet)
For the zip file click here

• Arsenite uptake assay, second data set

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindFdsLURvM1RYeD here] (GoogleDocs spreadsheet)

• [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Raw%20Data/Promoters/Fluorescence+OD.ods Promoter tests], using various constitutive and metal sensitive promoters.
• [http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Photos/ Photos] of our gas vesicles in test tubes

and TEM pictures of our gas vesicles.