SBML

SBML is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language. For writing the models in SBML we used the COPASI program.

JSim

To bridge the gap between agent based models (Java) and cellular models (SBML), the Newcastle team are using a software product called JSim, developed by the University of Washington.

Models developed

The following are models which we have developed using SBML:

External links

[http://sbml.org SBML]
[http://www.copasi.org/tiki-index.php COPASI]

20 – 21 June 2009 - Europe workshop (London)
23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
23 October Practice Presentation (Newcastle)
23 October T-shirts are ready
27 October Practice Presentation (Sunderland)
27 October Poster is ready
30 October – 2 November 2009 - Jamboree (Boston)

Newcastle iGEM Twitter
[http://www.facebook.com/home.php#/group.php?gid=131709337641 Newcastle on Facebook]
[http://www.youtube.com/user/newcastle2009igem Newcastle Youtube Channel]

Team:Newcastle/SBML

From 2009.igem.org

Contents

SBML

JSim

Models developed

External links