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Contents 1 Computational Modelling 1.1 Sub-projects 1.1.1 Stochastic Switch 1.1.2 Population modelling

Computational Modelling

For computational modelling, we are using a number of technologies, including Java, Matlab and CellML.

Sub-projects

Stochastic Switch

Here are the matlab files for our stochastic switch model, and below are some graphs which the model produced.

• File:Newcastle Metalcontainerruntime.m
• File:Newcastle Metalcontainer initial values.m
• File:Newcastle Metalcontainer.m

Population modelling

One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population.

This model is currently being implemented in the Java programming language, and connects to other models which we have written in CellML. Due to the design of the program, the team has enlisted the help of some very powerful computers.