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Minnesota/29 June 2009
From 2009.igem.org
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Patrick
I switched over today to looking at making the "leakiness" equations for the TTN model. Initially I would represent the leakiness with two equations:
| Rxn # | Reaction | Forward Kinetic Constant |
|---|---|---|
| 46 | RNAp + lacP + tetO1:tetR2 + tetO2 -> RNAp:lacP | 1E+07 |
| 47 | RNAp + lacP + tetO1 + tetO2:tetR2 -> RNAp:lacP | 1E+07 |
The aTc complexes don't have to be represented since the leakiness is for aTc=0 in particular. Also a third leakiness equation could be made, one where both tetO1:tetR2 and tetO2:tetR2 exist, but I chose to add this later if necessary. I expect the results tomorrow.
Ben
| Reaction | Forward Kinetic Constant | Reverse Kinetic Constant |
|---|---|---|
| RNAp + tetO1:tetR2 + lacP -> RNAp:lacP + tetR2 | 310 | |
| RNAp + tetO1:aTc:tetR2 + lacP -> RNAp:lacP + tetR2 | 310 | |
| RNAp + tetO1:aTc2:tetR2 + lacP -> RNAp:lacP + tetR2 | 310 |
