Team:Warsaw/Calendar-Main/22 April 2009

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PCR mgtc, hly

Kamila


Tasks:

  • Amplification of hly

Methods:

  • PCR mixture's composition:

    2,5ul pfu buffer (Fermentas), 2,5ul MgSO4 (Fermentas), 1,5ul primers, 1,5ul dNTPs (10 mM), 01,ul pfu turbo polymerase (Fermentas), 1ul template DNA from Listeria, solution was topped up with H2O to 25ul.

    2 repeats of every sample were made.

  • PCR programs:
  • mgtc

    90s 95°C 
    (30s 95°C, 35s 48°C, 60s 72°C)x2
    (30s 95°C, 35s 58°C, 60s 72°C)x28
    600s 72°C
    ~ 4°C

    hly

    90s 95°C 
    (30s 95°C, 35s 42°C, 150s 72°C)x2
    (30s 95°C, 35s 47°C, 150s 72°C)x28
    600s 72°C
    ~ 10°C
  • Electrophoretic separation on 1% agarose gel

Results:

  • Gel (from left)
  1. GeneRuler DNA Ladder Mix #SM0333 (Fermentas)
  2. mgtc 1 repeat
  3. mgtc 2 repeat
  4. mgtc sample -
  5. hly 1 repeat
  6. hly 2 repeat
  7. hly sample -

Notes:

  • Inappropriate template DNA was used for mgtc (ganomic DNA from Yersinia instead of genomic DNA from Listeria).