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Lab Work - 30/07/09

Introduction

In the previous lab session, a number of different things happened. The team digested the three sets of mini-preps originating from E. coli transformed with BBa_C0056, BBa_B1002 and BBa_R0077 with EcoRI and PstI; when run on agarose gel it could be seen that the correct DNA had been transformed!. Also in the previous lab session the team attempted a second transformation of JM109 E. coli cells with BioBricks BBa_C0077 and BBa_C0076. And finally the team chose some cells to be frozen down for long term storage and grew those selected cultures up in LB solutions.

Today's lab work will involve completing the freezing down bacteria procedure. It will also involve observing the LB + Kan plates for any BBa_C0077 and BBa_C0076 transformants; if there are colonies then mini-preps will be conducted and if the transformations have failed then a final attempt at transforming E. coli cells will commence. The team will also be given a lesson by PhD student Chris Birchall on how to pour LB agar plates the way in which Dr. Phil Aldridge pours plates.

Practical Outline

These are the tasks the team need to complete by today:

1. Observe BBa_C0077 and BBa_C0076 transformants on LB + kan plates
   1. If successful inoculate 5ml LB with colonies for mini-preps tomorrow
   2. If failed conduct a final set of E. coli transformations
2. Prepare and pour some LB agar plates according to Dr. Phil Aldridge's method
3. Freeze down cells for TPA collection

Observations

When the two LB + kan plates containing E. coli plus BBa_C0077 and E. coli plus BBa_C0076 were observed today, no colonies were found on either plate!

This presents us with a very difficult situation; we only have 1ul of DNA left to conduct our final transformations! The team took the decision to carry out one final transformation but thsi time to use the DH5-alpha E. coli cells which have worked well in previous transformations.

Procedure

Preparing and Pouring plates

Freezing Strains for TPA collection

Transforming E. coli with BBa_C0077 and BBa_C0076

The decision was taken to abandon transformations in JM109 cells and instead to use DH5-alpha E. coli cells for transforming with BBa_C0077 and BBa_C0076.

This meant that we used Dr. Aldridge's Transformation protocol to carry out this procedure. There were a few changes to the protocol:

• Step 4 - the team are adding the remaining 1ul of BioBrick DNA (BBa_C0077 and BBa_C0076).
• Steps 2 and 5 - the waiting times were changed from 30 minutes to 15 minutes.
• Step 9 - the team plated out 50ul of each set of E. coli transformants onto LB plates.
• Extra Step - the team then spun down the remainder of the two sets of E. coli cells and resuspended them each into 200ul fresh LB solution (under aseptic conditions). These were then all plated on LB+kan plates.

The plates, which were appropriately labelled, were then stored in the 37C incubator for overnight growth.