Team:EPF-Lausanne/Analysis

From 2009.igem.org

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(RMSD of selected atoms compared to initial position along time)
(RMSD of selected atoms compared to initial position along time)
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We made a small TCL script to calculate RMSD from selected atoms compared to their initial position along timestep.
We made a small TCL script to calculate RMSD from selected atoms compared to their initial position along timestep.
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The file can be found [[Media:Residue_rmsd_igem09.txt|here.]] Please rename to Residue_rmsd_igem09<b>.tcl</b> after download.
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The file can be found <a href="https://static.igem.org/mediawiki/2009/a/ad/Residue_rmsd_igem09.txt>here</a>. Please rename to Residue_rmsd_igem09<b>.tcl</b> after download.
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Example to run the script:
Example to run the script:

Revision as of 12:25, 8 September 2009


Analysis of Equilibrium





Scripts

As this page is getting crowded, we created another page to explain all the scripts we wrote. The current page has some kind of step by step tutorials, but if you want fast informations, you better go to the script page.


Examples

Maxwell-Boltzmann Energy Distribution

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Energies

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Temperature distribution

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Density

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Pressure as a function of simulation time

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RMSD for individual residues

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RMSD of selected atoms compared to initial position along time

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Salt bridges

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RMSF

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