Team:EPF-Lausanne/Implementation

From 2009.igem.org

(Difference between revisions)
Line 58: Line 58:
<select name="boite1" onChange="choix(this.form)">
<select name="boite1" onChange="choix(this.form)">
<option selected>...........Choisissez une rubrique...........</option>
<option selected>...........Choisissez une rubrique...........</option>
-
<option>How to run simulation href="https://2009.igem.org/Team:EPF-Lausanne/Modeling/Simulation"</option>
+
<option>How to run simulation</option>
<option>rugby</option>
<option>rugby</option>
<option>basket</option>
<option>basket</option>

Revision as of 09:08, 28 July 2009

Contents

Implementation of the simulation




LOV domains are the light-sensitive portion of phototropins. They absorb light through a flavin cofactor, photo-chemicaly form a covalent bond between the chromophore and a cysteine residue in the protein, and proceed to mediate activation of an attached kinase domain.

Generating input files

First we need a compatible .pdb in addition to parameter and topology files. Steps to generate all the input files are explained in detail on this page How to generate input files. This is a kind of summary of the tuto.

.conf parameters

We should explain here what are the keywords we use in the .conf.

Run a complete simulation

We start from .pdb, .psf, .rtf generated in the previous section. Complete process is on a separate page How to run a simulation.


liste déroulante dynamique