"
Team:EPF-Lausanne/Implementation
From 2009.igem.org
(Difference between revisions)
| Line 3: | Line 3: | ||
</div><div CLASS="epfl09"> | </div><div CLASS="epfl09"> | ||
| + | <html><center> | ||
| + | <font size="6" color="#007CBC"><i>Implementation of the simulation</i></font> | ||
| + | </center></html> | ||
| + | <br> | ||
| + | ---- | ||
| + | <br> | ||
| + | <br> | ||
| - | |||
LOV domains are the light-sensitive portion of phototropins. They absorb light through a flavin cofactor, photo-chemicaly form a covalent bond between the chromophore and a cysteine residue in the protein, and proceed to mediate activation of an attached kinase domain. | LOV domains are the light-sensitive portion of phototropins. They absorb light through a flavin cofactor, photo-chemicaly form a covalent bond between the chromophore and a cysteine residue in the protein, and proceed to mediate activation of an attached kinase domain. | ||
Revision as of 14:24, 27 July 2009
LOV domains are the light-sensitive portion of phototropins. They absorb light through a flavin cofactor, photo-chemicaly form a covalent bond between the chromophore and a cysteine residue in the protein, and proceed to mediate activation of an attached kinase domain.
Generating input files
First we need a compatible .pdb in addition to parameter and topology files. Steps to generate all the input files are explained in detail on this page How to generate input files. This is a kind of summary of the tuto.
.conf parameters
We should explain here what are the keywords we use in the .conf.
Run a complete simulation
We start from .pdb, .psf, .rtf generated in the previous section. Complete process is on a separate page How to run a simulation.
