Team:Groningen/Modelling/Downloads

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{{Team:Groningen/Modelling/Header}}
{{Team:Groningen/Modelling/Header}}
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{{Category:Upload}}
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<div style="float:left" >{{linkedImage|GroningenPrevious.png|Team:Groningen/Modelling/Characterization}}</div>
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<div title="Arsie Says UP TO ACCUMULATION" style="float:right" >{{linkedImage|Next.JPG|Team:Groningen/HumanPractice}}</div>
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==Downloads of Modelling raw data==
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<br>
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==Downloads of Modelling data/code==
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*[http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Raw%20Data/ All our raw data from papers] is available in SVN in a [http://code.google.com/p/igemgroningen/ Google Code project].
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*[http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/Heavy%20Metal%20Scavenger.xml An SBML version of our model.] (Not a complete match, because our model apparently needs a slightly too complex DAE.)
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*[http://code.google.com/p/igemgroningen/source/browse/trunk/# A patch to Inkscape's measure.inx/.py to be able to measure in nanometers.]
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*[http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/ Miscellaneous other stuff regarding our model.] (Early versions, Mathematica notebooks for computing certain parameters and so on.)
==Downloads of Biological raw data==
==Downloads of Biological raw data==
*Promoter test of J61002-ArsR promoter, under induction of 100uM NaAsO2.
*Promoter test of J61002-ArsR promoter, under induction of 100uM NaAsO2.
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For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindDlQOEJCdUpISTU4M2cweE5PT3p3MVE&hl=en here] (GoogleDocs spreadsheet)<br>
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The original Excel [https://2009.igem.org/Image:RPU_Calculations.zipsheet sheet]
*Arsenite uptake assay, first data set
*Arsenite uptake assay, first data set
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For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindE9OSjFpZzdGU2cxejU2S0lPaU80dlE&hl=en here] (GoogleDocs spreadsheet)<br>For the zip file click [https://2009.igem.org/Image:Berekeningen.zip here]
*Arsenite uptake assay, second data set
*Arsenite uptake assay, second data set
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For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindFdsLURvM1RYeDBSZTJRb0tCVjByNGc&hl=en here] (GoogleDocs spreadsheet)
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*[http://igemgroningen.googlecode.com/svn/trunk/buoyant/Raw%20Data/Promoters/Fluorescence+OD.ods Promoter tests], using various constitutive and metal sensitive promoters.
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*[http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Photos/ Photos] of our gas vesicles in test tubes
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and TEM pictures of our gas vesicles.
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{{Team:Groningen/Footer}}
{{Team:Groningen/Footer}}

Latest revision as of 20:44, 21 October 2009

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Downloads of Modelling data/code

  • [http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Raw%20Data/ All our raw data from papers] is available in SVN in a [http://code.google.com/p/igemgroningen/ Google Code project].
  • [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/Heavy%20Metal%20Scavenger.xml An SBML version of our model.] (Not a complete match, because our model apparently needs a slightly too complex DAE.)
  • [http://code.google.com/p/igemgroningen/source/browse/trunk/# A patch to Inkscape's measure.inx/.py to be able to measure in nanometers.]
  • [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Models/ Miscellaneous other stuff regarding our model.] (Early versions, Mathematica notebooks for computing certain parameters and so on.)

Downloads of Biological raw data

  • Promoter test of J61002-ArsR promoter, under induction of 100uM NaAsO2.

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindDlQOEJCdUpISTU4M2cweE5PT3p3MVE&hl=en here] (GoogleDocs spreadsheet)
The original Excel sheet

  • Arsenite uptake assay, first data set

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindE9OSjFpZzdGU2cxejU2S0lPaU80dlE&hl=en here] (GoogleDocs spreadsheet)
For the zip file click here

  • Arsenite uptake assay, second data set

For the raw data click [http://spreadsheets.google.com/ccc?key=0AiVK6TJREwindFdsLURvM1RYeDBSZTJRb0tCVjByNGc&hl=en here] (GoogleDocs spreadsheet)

  • [http://igemgroningen.googlecode.com/svn/trunk/buoyant/Raw%20Data/Promoters/Fluorescence+OD.ods Promoter tests], using various constitutive and metal sensitive promoters.
  • [http://code.google.com/p/igemgroningen/source/browse/trunk/buoyant/Photos/ Photos] of our gas vesicles in test tubes

and TEM pictures of our gas vesicles.