Team:Newcastle/Modelling

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(Sporulation tuning)
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[[Image:Team Newcastle iGem 2009 08-07-09 no 7.JPG|300px|center]]
[[Image:Team Newcastle iGem 2009 08-07-09 no 7.JPG|300px|center]]
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For computational modelling, we are using a number of technologies, including [[Team:Newcastle/Java|Java]], [[Team:Newcastle/Matlab|Matlab]], SBML and [[Team:Newcastle/CellML|CellML]].
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For computational modelling, we are using a number of technologies, including [[Team:Newcastle/Java|Java]], [[Team:Newcastle/Matlab|Matlab]], [[Team:Newcastle/Amazon EC2|Amazon EC2]], [[Team:Newcastle/Microbase|Microbase]], [[Team:Newcastle/SBML|SBML]] and [[Team:Newcastle/CellML|CellML]].
== Sub-projects ==
== Sub-projects ==
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===Stochastic Switch===
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=== Stochastic Switch ===
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:'' See [[Team:Newcastle/Modelling/Stochastic]]''
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: '' See [[Team:Newcastle/Modelling/Stochastic|Stochastic Switch Model]]''
We are modelling our stochastic switch.
We are modelling our stochastic switch.
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We also designed an inducable protein degradation system for our switch.
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We also designed an inducible protein degradation system for our switch.
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:'' See [[Team:Newcastle/Modelling/Degradation]]''
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: '' See [[Team:Newcastle/Modelling/Degradation|Degradation Model]]''
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=== Population modelling ===
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=== Population Modelling ===
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:'' See [[Team:Newcastle/Modelling/Population]]''
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: '' See [[Team:Newcastle/Modelling/Population|Population Simulation]]''
One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population.
One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population.
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=== Sporulation tuning ===
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=== Sporulation Tuning ===
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<!--:'' See [[Team:Newcastle/Modelling/Tuning]]''-->
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<!--: '' See [[Team:Newcastle/Modelling/Tuning]]''-->
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:'' See [[Team:Newcastle/SporulationTuning#Modelling ]]''
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: '' See [[Team:Newcastle/SporulationTuning#Modelling|Sporulation Tuning Model]]''
Another of our models looks at tuning sporulation.
Another of our models looks at tuning sporulation.
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=== Metal intake ===
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=== Metal Intake ===
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:'' See [[Team:Newcastle/Modelling/MetalIntake]]''
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: '' See [[Team:Newcastle/Modelling/MetalIntake|Metal Intake Model]]''
Another of our models looks at metal intake.
Another of our models looks at metal intake.
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Revision as of 23:18, 20 October 2009


Computational Modelling

Team Newcastle iGem 2009 08-07-09 no 7.JPG

For computational modelling, we are using a number of technologies, including Java, Matlab, Amazon EC2, Microbase, SBML and CellML.

Sub-projects

Stochastic Switch

See Stochastic Switch Model

We are modelling our stochastic switch.

We also designed an inducible protein degradation system for our switch.

See Degradation Model

Population Modelling

See Population Simulation

One of the models which we are producing is one concerning the population numbers of our bacteria. It looks at how our additions to the DNA may affect the growth of the bacterial population.

Sporulation Tuning

See Sporulation Tuning Model

Another of our models looks at tuning sporulation.

Metal Intake

See Metal Intake Model

Another of our models looks at metal intake.




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