Team:Warsaw/Calendar-Main/8 May 2009

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PCR mgtc, pho

Kama


Tasks:

  • Amplification of pho and mgtc

Methods:

  • PCR mixture's composition:

    2,5μl pfu buffer (Fermentas) 
    2,5μl MgSO4 (Fermentas) 
    1,5μl primers 
    1μl dNTPs (10 mM) 
    0,5μl pfu turbo polymerase (KNGiE) 
    1μl template (Salmonella)

    The solution was topped up with H2O to 20μl.

  • PCR programs:
  • pho

    2min30s 95°C 
    (30s 95°C, 35s 56°C, 3min30s 72°C)x3
    (30s 58°C, 35s 61°C, 3min30 72°C)x28
    10min 72°C
    ~ 7°C

    mgtc

    1min30s 95°C 
    (30s 95°C, 35s 48°C, 1min 72°C)x3
    (30s 95°C, 35s 63°C, 1min 72°C)x28
    10min 72°C
    ~ 7°C
  • Electrophoretic separation on 1% agarose gel

Results:

  • Gel (from left)
  1. GeneRuler DNA Ladder Mix #SM0333 (Fermentas)
  2. pho
  3. pho control -
  4. mgtc
  5. mgtc sample -

Notes:

  • denaturation temperature value was wrong for pho.




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