From 2009.igem.org

Though E. coli does not naturally produce pigment, several other bacterial species secrete pigmented antibiotics. We mined bacterial genomes for pigment-producing operons, and transformed the most prominent candidates into E. coli. In particular, we have devoted our summer to 3 different pigment systems:

Carotenoids: The enzymes required for carotenoid production originally come from Pantoea ananatis, and were available in the registry. We used them to produce orange and red.
Melanin: The tyrosinase required for melanin production originally comes from Rhizobium etli and produces brown.
Violacein: The enzymes required for voilacein production originally come from Chromobacterium violacein. The operon can be manipulated to produce voilet, green, and blue.

We chose to pursue these 3 pigment systems for two main reasons.

Visual Diversity: Not only do these devices come from different bacterial species, but between these systems we've almost made -- as cheesey as it sounds -- all the colours of the rainbow.

A COOL PICTURE HERE

Design: We were able to use a variety of different techniques to build and design these pigment systems as biobricks. The carotenoid parts were already in the Registry, and were used standard assembly protocols to build pigment producing devices. The melanin system is a single gene which we endeavoured to turn into a biobrick by PCR. Finally, we designed the violacein operon for synthesis, codon optimizing it for both E. coli and B. subtilis and designing it so it is easy to manipulate to generate different pigments.

Potential for Gene Manipulation: The melanin system is particularly elegant in that a single gene is able to generate pigment as long as the bacteria are supplemented with copper and tyrosine. On the flip side, the carotenoid and violacein systems are multi-gene operons that make more than one pigment each. Further, they generate pigments without any supplements to the media.

@@ Line 9: / Line 9: @@
 We chose to pursue these 3 pigment systems for two main reasons.
-'''Visual Diversity''':  Between these systems we've almost made -- as cheesey as it sounds -- all the colours of the rainbow.
+'''Visual Diversity''':  Not only do these devices come from different bacterial species, but between these systems we've almost made -- as cheesey as it sounds -- all the colours of the rainbow.
 A COOL PICTURE HERE
-'''Design''':  We were able to use a variety of different techniques to build and design these pigment systems as biobricks.  The carotenoid parts were already in the Registry, and were used standard assembly protocols to build pigment producing devices.  The melanin system is a single gene which we endeavoured to turn into a biobrick by PCR.  Finally, we designed the violacein operon for synthesis, codon optimizing it for both ''E. coli'' and '''B. subtilis''' and designing it so it is easy to manipulate to generate different pigments.
+'''Design''':  We were able to use a variety of different techniques to build and design these pigment systems as biobricks.  The carotenoid parts were already in the Registry, and were used standard assembly protocols to build pigment producing devices.  The melanin system is a single gene which we endeavoured to turn into a biobrick by PCR.  Finally, we designed the violacein operon for synthesis, codon optimizing it for both ''E. coli'' and ''B. subtilis'' and designing it so it is easy to manipulate to generate different pigments.
+'''Potential for Gene Manipulation''':  The melanin system is particularly elegant in that a single gene is able to generate pigment as long as the bacteria are supplemented with copper and tyrosine.  On the flip side, the carotenoid and violacein systems are multi-gene operons that make more than one pigment each.  Further, they generate pigments without any supplements to the media.
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Team:Cambridge/Project/Pigments

From 2009.igem.org

Revision as of 17:21, 21 October 2009

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Pigments