Team:Cambridge/Project/Pigments

From 2009.igem.org


Colour Generators

The Kit of Parts

The Cambridge 2009 iGEM team searched far and wide to find suitable pigments that could be used as outputs. Though E. coli does not naturally produce any pigment, several other bacterial species secrete pigmented antibiotics. We mined bacterial genomes for pigment-producing operons, and transformed the most prominent candidates into E. coli. In particular, we have devoted our summer to 3 different pigment systems:

  • Carotenoids: The enzymes required for carotenoid production originally come from Pantoea ananatis, and were available in the registry. We used them to produce orange and red.

Cam09 ca1.jpgCam09 ca2.jpg


  • Melanin: The tyrosinase required for melanin production originally comes from Rhizobium etli and produces brown.

SDC105451.JPG

  • Violacein: The enzymes required for voilacein production originally come from Chromobacterium violacein. The operon can be manipulated to produce voilet, green, and blue.

Cam09 vio.jpgCam09 gre.jpg

As as a result of our efforts, this summer, we have submitted the following biobricks to the Registry. We hope that in the future this this kit of parts will be expanded in the future.

Biobrick Colour
BBa_K274100 Red
BBa_K274200 Orange
BBa_K274001 Brown
BBa_K274002 Violet
BBa_K274003 Dark Green
BBa_K274004 Light Green

Choosing Pigments

We chose to pursue these 3 pigment systems for two main reasons. Visual Diversity: Not only do these devices come from different bacterial species, but between these systems we've almost made -- as cheesey as it sounds -- all the colours of the rainbow.

RAINBOW.png

Design: We were able to use a variety of different techniques to build and design these pigment systems as biobricks. The carotenoid parts were already in the Registry, and were used standard assembly protocols to build pigment producing devices. The melanin system is a single gene which we endeavoured to turn into a biobrick by PCR. Finally, we designed the violacein operon for synthesis, codon optimizing it for both E. coli and B. subtilis and designing it so it is easy to manipulate to generate different pigments.

Potential for Gene Manipulation: The melanin system is particularly elegant in that a single gene is able to generate pigment as long as the bacteria are supplemented with copper and tyrosine. On the flip side, the carotenoid and violacein systems are multi-gene operons that make more than one pigment each. Further, they generate pigments without any supplements to the media.

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