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Team:Newcastle/Promoter Library
From 2009.igem.org
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Template used to create the promoter sequences: | Template used to create the promoter sequences: | ||
'''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix''' | '''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix''' | ||
| - | * BBPrefix - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag | + | * '''BBPrefix''' - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag |
| - | * UpSpacer - attta - consensus sigA 5 bases 5' | + | * '''UpSpacer''' - attta - consensus sigA 5 bases 5' |
| - | * -35 - TTGACA | + | * '''-35''' - TTGACA |
| - | * PromSpacer - length 17 - consensus ttttatttaaattatga | + | * '''PromSpacer''' - length 17 - consensus ttttatttaaattatga |
| - | * -10 - TATAAT | + | * '''-10''' - TATAAT |
| - | * DownSpacer (from ackA)- ggaaaag | + | * '''DownSpacer''' (from ackA)- ggaaaag |
| - | * BBSuffix - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag | + | * '''BBSuffix''' - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag |
==Lab Work Strategies== | ==Lab Work Strategies== | ||
Revision as of 20:43, 21 October 2009
Project
Sub-projects
Wet Lab
Meetings
Planning
Links
Promoter Library
Introduction
As a part of our project we wish to create a library of SigmaA promoters and characterise them based on their stregnths.
Novelty in this sub-project
A library of promoters with different strengths would be very useful for engineering biological devices. Promoters' strength can be compared with their PoPS values. However measuring the PoPS is not a trivial process. We can instead meausure their strengths relatively.
Design
Template used to create the promoter sequences: Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix
- BBPrefix - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag
- UpSpacer - attta - consensus sigA 5 bases 5'
- -35 - TTGACA
- PromSpacer - length 17 - consensus ttttatttaaattatga
- -10 - TATAAT
- DownSpacer (from ackA)- ggaaaag
- BBSuffix - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag
Lab Work Strategies
Other Presentations and Diagrams
News
Events
- 20 – 21 June 2009 - Europe workshop (London)
- 23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
- 23 October Practice Presentation (Newcastle)
- 23 October T-shirts are ready
- 27 October Practice Presentation (Sunderland)
- 27 October Poster is ready
- 30 October – 2 November 2009 - Jamboree (Boston)
Social Net
- Newcastle iGEM Twitter
- [http://www.facebook.com/home.php#/group.php?gid=131709337641 Newcastle on Facebook]
- [http://www.youtube.com/user/newcastle2009igem Newcastle Youtube Channel]
