Team:Groningen/Project/WholeSystem

From 2009.igem.org

Introduction

The metal scanvenger with a vertica gasdrive is a modular system which contains five modules; the transporter, an accumulation protein, a regulated promotor, a regulator and the gvp buoyancy cluster. The transporter imports the metal of choice in order to prevent the cell from dying an accumulation protein is needed to bind the metal. The metal also acts as a regulator for a certain promotor which activates the gvp-cluster. This system accumulates metal and upon accumulation starts to float. This can be convinient in cleaning or mining applications. The system created here was based on arsenic. This metal is very toxic and causes health problems all over the world. The transported used here is GlpF, a glycerol transported known to import arsenic as well (Meng, YL, et al.2004), (Rosen, BR, et al.2009) . Two accumulation proteins were choosen to accumulate arsenic, the fusion protein MBPArsR, and fMT, . Both accumulation proteins were combined with GlpF to create a new accumulation devices , . As metal sensitive promotor [[Team:Groningen/Project/Promotor| pArsR] was choosen and together with the gvp cluster made a part . The two devices, the accumulation device and the buoyancy device were transformated together to create the metal scanvenger with a vertical gasdrive.

Cloning Strategy

In order to use the buoyancy device() in combination with the accumulation device (, ) a two vector system was used (see Figure 1). This was chosen because it is not feasible to combine the 6kb gas vesicle cluster, with a 1kb transporter and 300bp metallothionein and their promoters in one vector. This would easily increase the size of (for instance a pSB1A2 vector) from 2kb to 10kb, a vector size which can hardly be transformed to E. coli. This two vector system is composed of a vector with the accumulation device(, ) and a vector with the buoyancy device () . This combination is made possible because the vectors contain respectively a pMB1 origin of replication and a P1 ori and contain different antibiotic resistance markers.

Figure 1: Whole system, combining the bouyancy device on a pSB2K3 vector and the accumulation device on a pSB1AC3 vector

Results

Combining parts and was done by using a normal transformation protocol with both ampicillin and kanamycin as antibiotics. A buoyancy test was performed as described also using both ampicillin and kanmycin as antibiotics. Iptg was also added to the dayculture to induce the part. In exponential phase 10μM NaAsO2 was added to half of the samples. A restriction was done to check the transformation.

Restriction

Figure 1 shows that the transformation of both vectors succeeded.

Figure 1

The gel shows a 1Kb marker to the far left, after that two times a restriction with EcoRI and PstI can be seen. This shows clearly fragments of 6000pb and 4500pb for the and fragments of 2000pb and 1300 bp for the . The next two slots show non-restricted plasmids, two distinc bands can be seen clearly indicating the presence of two plasmids.

Buoyancy test

The buoyancy test elegantly shows that combining both an accumulation device and the gvp-buoyancy device allows buoyancy.

Figure 2

On the left E. coli cells (containing the whole system) without arsenic can be seen and on the right E. coli cells (containing the whole system) with arsenic is shown. It can be seen that the right sample floats. This indicates that the GlpF is transporting the arsenic inside the cells, the fMT accumulates it (otherwise the cells would be dead) and the gvp was induced by the arsenic so the cells start to float.

Conclusion