Categories :

Home Team Sponsors Parts Submitted to Registry Image Gallery Leave a Message!

Project :

Overview Sensitivity Tuner --- Characterisation --- Modelling Colour Generators --- Carotenoids (Orange/Red) --- Melanin (Brown) --- Violacein (Purple/Green) The Future Safety

Notebook :

Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10

Team Logistics :

Protocols Stock List Research Shared Links and Help

Carotenoids

TESTING AND CHARACTERISATION

In vivo expression of our devices in E.coli MG1655

Our preliminary research indicated that carotenoids production in E.coli TOP10 was very weak. We decided to use another strain, E.coli MG1655, for in vivo expression of our devices. The amount of carotenoids produced became visibly higher. Generally, the colour became visible after incubation for about 12 hours.

Lycopene-producing device (constitutive)

E.coli MG1655 transformed with K274110 and grown on agar plate overnight.	Cell pellet of E.coli MG1655 transformed with K274210 (from 20mL LB culture at 37°C for 24 hours).

β -carotene-producing device (constitutive)

E.coli MG1655 transformed with K274210 and grown on agar plate overnight.	Cell pellet of E.coli MG1655 transformed with K274220 (from 20mL LB culture at 37°C for 24 hours).

Quantitative measurement of pigment production

In addition to visual inspection of coloured colonies, we hope to quantitatively measure the amount of lycopene or β-carotene produced by our devices. We grew transformed E.coli MG1655 in LB culture at 37°C for 24 hours and collected cell pellet by centrifugation. Acetone was added to the cell pellet and warmed at 50°C for 10 minutes, allowing carotenoids (lycopene or β-carotene) in the cells to dissolve. The acetone extracts were then put into MicroPlate Reader for a full photospectrum scan (wavelengths between 300nm and 800nm). The absorbance curves showed peaks characteristics of the respective carotenoids: at wavelength 474nm for lycopene, and 456nm for β-carotene. In the case of β-carotene, we used pure β-carotene of known amount as the standard reference and included it in the graph below.

Lycopene-producing device (constitutive)

Lycopene in cells (pellet from 20mL LB culture at 37°C for 24h) was extracted with 300μL acetone. For each reading, 100μL acetone exextract was diluted with 100μL water and loaded on to MicroPlate Reader for a full spectrum. Each graph shows the average of two readings. Value normalised with blank (50% acetone) and OD600.

β -carotene-producing device (constitutive)

β-carotene in cells (pellet from 20mL LB culture at 37°C for 24h) was extracted with 500μL acetone. 100μL acetone extract was diluted with 100μL water and loaded on to MicroPlate Reader for a full spectrum scan. Value normalised with blank (50% acetone) and OD600. Pure carotene (from Invitrogen) was added as standard. Each graph shows average of three readings.

To investigate the induction of pigment production, we tested our device K274220 in E.coli MG1655 and 1mM arabinose was added to LB culture. Cell culture that was induced with arabinose showed greater β-carotene production than cell culture without arabinose, indicating the feasibility of inducing pigment production. Using known amount of pure β-carotene to construct a standard curve, we were able to estimate the amount of β-carotene produced per unit volume of cell culture by our device.

β-carotene in cells (pellet from 20mL LB culture at 37°C for 24h; 1mM arabinose was used for induction) was extracted with 500μL acetone. 100μL acetone extract was diluted with 100μL water and loaded on to MicroPlate Reader for a full spectrum scan. Value normalised with blank (50% acetone) and OD600. Pure carotene (Invitrogen) was added as standard. Each graph shows average of three readings.

Rough Estimation

Discussion of results

Despite relatively poor performance in E.coli TOP10, our pigment-producing devices gave encouraging results in E.coli MG1655. Simply by overnight incubation, the colonies were able to show visible colour changes. Since the precursors were already present in normal E.coli, no additional growth medium or special treatment was needed. This paves the way to developing a signalling system that is quick to produce visual outputs.

The acetone extraction of carotenoid provides a low-cost method for quantitative measurement. In the above experiments, the results of photo-spectrometry were consistent with characteristic absorbance wavelengths of lycopene (around 475nm) and β-carotene (around 450nm), as noted in literature. In the case of β-carotene, the absorbance profile of our β-carotene-producing device (K274210) matched that of pure carotene standards, confirming that our device was functional in the cells.

When we overlay the graphs of our two devices (constitutive), we obtained the following result:

red: K274110/lycopene; orange: K274210/β-carotene; black: pure β-carotene; blue: untransformed E.coli MG1655 (negative control).

Lycopene and β-carotene showed characteristic absorbance profiles, with different maximum absorbance wavelengths. It was tempted to think that by converting lycopene to β-carotene (e.g. by expressing CrtY gene), we would be able to see a “shift” in the peaks of maximum absorbance. However, in the bar charts above it was noted that lycopene and β-carotene had significant absorbance at both 456nm and 474nm, albeit with different ratios (i.e. lycopene absorbed more at 474nm; β-carotene absorbed more at 456nm). Therefore, measurement at a single wavelength was insufficient to determine the identity of the carotenoid; we might need to use “456nm:474nm” ratio instead. It would be interesting to see the effect of mixing different amounts of lycopene and β-carotene, and whether the “456nm:474nm” ratio can indicate the relative percentage of lycopene and β-carotene. In the current project, we were unable to obtain pure lycopene due to high cost of purchase.

In terms of inducing β-carotene production, 1mM arabinose, acting on Pbad promoter, was able to produce a level of synthesis close to that under constitutive promoter. In the non-induced population, there was probably a small degree of “leakiness” and basal level of gene expression (leading to some β-carotene synthesis). In future experiments, it might be helpful to move the pigment-producing devices to low copy plasmids and reduce the effect of such basal expression.

One possible design using our devices is to construct a system where lycopene is constitutively produced and CrtY, which converts red lycopene to orange β-carotene, is controlled by external stimulus. Hence, the red cells will turn orange upon sensing the specific external stimulus, and this change in colour serves as the signal output that can be detected visually and measured quantitatively at low cost.