Team:Newcastle/Promoter Library

From 2009.igem.org

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(Design)
(Design)
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==Design==
==Design==
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[[Image:Team_Newcastle_iGEM_Promoter_Library1.png]]
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Template used to create the promoter sequences:
Template used to create the promoter sequences:
'''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix'''
'''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix'''
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* '''DownSpacer''' (from ackA)- ggaaaag
* '''DownSpacer''' (from ackA)- ggaaaag
* '''BBSuffix''' - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag
* '''BBSuffix''' - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag
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===Variances===
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# BBPrefix...UpSpacer...N-35... PromSpacer...N-10...DownSpacer..BBSuffix
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# BBPrefix...UpSpacerNN...-35...NNPromSpacerNN...-10...NNDownSpacer..BBSuffix
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# BBPrefix...UpSpacer...-35... 18N’s...-10...DownSpacer..BBSuffix
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====Variance 1 ===
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====Variance 2 ===
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====Variance 3 ===
==Lab Work Strategies==
==Lab Work Strategies==

Revision as of 20:52, 21 October 2009


Promoter Library

Introduction

As a part of our project we wish to create a library of SigmaA promoters and characterise them based on their stregnths.

Novelty in this sub-project

A library of promoters with different strengths would be very useful for engineering biological devices. Promoters' strength can be compared with their PoPS values. However measuring the PoPS is not a trivial process. We can instead meausure their strengths relatively.

Design

Team Newcastle iGEM Promoter Library1.png

Template used to create the promoter sequences: Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix

  • BBPrefix - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag
  • UpSpacer - attta - consensus sigA 5 bases 5'
  • -35 - TTGACA
  • PromSpacer - length 17 - consensus ttttatttaaattatga
  • -10 - TATAAT
  • DownSpacer (from ackA)- ggaaaag
  • BBSuffix - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag

Variances

  1. BBPrefix...UpSpacer...N-35... PromSpacer...N-10...DownSpacer..BBSuffix
  2. BBPrefix...UpSpacerNN...-35...NNPromSpacerNN...-10...NNDownSpacer..BBSuffix
  3. BBPrefix...UpSpacer...-35... 18N’s...-10...DownSpacer..BBSuffix

=Variance 1

=Variance 2

=Variance 3

Lab Work Strategies

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