Team:TUDelft/Conjugation Procedure
From 2009.igem.org
(Difference between revisions)
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** [http://partsregistry.org/wiki/index.php?title=Part:BBa_K175000 BBa_K175000] (trbC) | ** [http://partsregistry.org/wiki/index.php?title=Part:BBa_K175000 BBa_K175000] (trbC) | ||
* Verify that trbK expression blocks conjugation [https://2009.igem.org/Team:TUDelft/19_August_2009#Calin <font color=limegreen>✔</font>] | * Verify that trbK expression blocks conjugation [https://2009.igem.org/Team:TUDelft/19_August_2009#Calin <font color=limegreen>✔</font>] | ||
+ | * Place trbK on standard backbone and send to registry <font color=limegreen>✔</font> | ||
* Amplify and Transform BioBricks needed | * Amplify and Transform BioBricks needed | ||
- | ** [http://partsregistry.org/ | + | ** [http://partsregistry.org/Part:BBa_I13522 BBa_I13522] (pTet-RBS-GFP-term-term) <font color=limegreen>✔</font> |
- | ** [http://partsregistry.org/wiki/index.php?title=Part: | + | ** [http://partsregistry.org/wiki/index.php?title=Part:BBa_I714031 BBa_I714031] (oriTR) <font color=limegreen>✔</font> |
- | ** [http://partsregistry.org/wiki/index.php?title=Part: | + | ** [http://partsregistry.org/wiki/index.php?title=Part:BBa_J13002 BBa_J13002] (pTet-RBS) <font color=limegreen>✔</font> |
- | ** [http://partsregistry.org/wiki/index.php?title=Part: | + | ** [http://partsregistry.org/wiki/index.php?title=Part:BBa_E0840 BBa_E0840] (RBS-GFP-term-term) <font color=limegreen>✔</font> |
* Assemble Conjugation Testing Plasmid 1: [promoter][GFP generator][oriT] <font color=limegreen>✔</font> | * Assemble Conjugation Testing Plasmid 1: [promoter][GFP generator][oriT] <font color=limegreen>✔</font> | ||
* Verify Conjugation Testing Plasmid 1 works. <font color=limegreen>✔</font> | * Verify Conjugation Testing Plasmid 1 works. <font color=limegreen>✔</font> |
Revision as of 18:19, 19 October 2009
Experimental Procedures
Section 1: Helper Plasmid
Part 1A:
Part 1B: oriTR knockout
- Design and order primers needed for λ-red knockout ✔
- Acquire knockout plasmids ✔
- Knockout oriTR **In Progress**
- Verify that conjugation stopped **In Progress**
- Characterize conjugation efficiency of Conjugation Testing Plasmid 1 with R751 ΔoriTR as helper
- Send R751 ΔoriTR plasmid to registry
Part 1C: trbK knockout
- Knockout trbK **In Progress**
- Verify that conjugation takes place among R751 ΔtrbK cells
- Characterize conjugation efficiency
- Send R751 ΔoriT + ΔtrbK plasmid to registry
Part 1D: trbC knockout
- Knockout trbC
- Verify that no conjugation takes place in presence of Conjugation Testing Plasmid 1
- Send R751 ΔoriT + ΔtrbK + ΔtrbC plasmid to registry
Section 2: Message Plasmid
Part 2A: BioBrick Assembly
- Order DNA synthesis for
- BBa_K175001 (trbK) ✔
- BBa_K175000 (trbC)
- Verify that trbK expression blocks conjugation ✔
- Place trbK on standard backbone and send to registry ✔
- Amplify and Transform BioBricks needed
- BBa_I13522 (pTet-RBS-GFP-term-term) ✔
- BBa_I714031 (oriTR) ✔
- BBa_J13002 (pTet-RBS) ✔
- BBa_E0840 (RBS-GFP-term-term) ✔
- Assemble Conjugation Testing Plasmid 1: [promoter][GFP generator][oriT] ✔
- Verify Conjugation Testing Plasmid 1 works. ✔
- Sequence Conjugation Testing Plasmid 1. **In Progress**
- Assemble Conjugation Testing Plasmid 2 [promoter][rbs][trbK][rbs][GFP][oriT] ✔
- Verify Conjugation Testing Plasmid 2 works. **In Progress**
- Sequence Conjugation Testing Plasmid 2. **In Progress**
Part 2B: Full Communication testing
- Electroporate Conjugation Testing Plasmid 2 into some R751 ΔoriT cells creating InitiatorCells (select for presence of both message and helper plasmid)
- Add InitiatorCells to a culture of R751 ΔoriT + ΔtrbK and observe signal propagation, characterize rate of signal propagation. Look for lethal zygosis issues.
- If signal propagation observed, do victory dance.
For more information on the cloning strategy of constructing the conjugation plasmids and knockouts check the cloning strategy page