Team:TUDelft/Modeling Conjugation Plots

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(New page: {{Template:TUDelftiGEM2009_menu_Model}} =Conjugation Modeling Plots= ==SIM1== Parameters used: g<sub>r</sub> = 20 μm/hr λ = 5.76 CFU/mm<sup>2</sup> (N<sub>d</sub> = 10000...)
(Undo revision 153660 by Sriram.tk (Talk))
 
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{{Template:TUDelftiGEM2009_menu_Model}}
{{Template:TUDelftiGEM2009_menu_Model}}
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=Conjugation Modeling Plots=
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='''Conjugation Modeling Plots'''=
 +
Here is a selection of the various simulations made.
-
 
+
==''SIM1''==
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==SIM1==
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Parameters used:  
Parameters used:  
Line 46: Line 46:
|}
|}
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==SIM2==
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==''SIM2''==
Parameters used:  
Parameters used:  
Line 56: Line 56:
Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
-
==SIM3==
+
Animation of conjugation showing all colonies:
 +
[[Image:Gr30ng099_1hr_ani_all.gif|border]]
 +
 
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:Gr30ng099_1hrb1R.png | Recipients at T = 0 hr.
 +
 
 +
Image:Gr30ng099_1hrb1D.png | Donors at T = 0 hr.
 +
 
 +
Image:Gr30ng099_1hrb1T.png | Transconjugants at T = 0.1 hr.
 +
 
 +
Image:Gr30ng099_1hrb2T.png | Transconjugants at T = 0.2 hr.
 +
 
 +
Image:Gr30ng099_1hrb3T.png | Transconjugants at T = 0.3 hr.
 +
 
 +
Image:Gr30ng099_1hrb4T.png | Transconjugants at T = 0.4 hr.
 +
 
 +
Image:Gr30ng099_1hrb5T.png | Transconjugants at T = 0.5 hr.
 +
 
 +
Image:Gr30ng099_1hrb6T.png | Transconjugants at T = 0.6 hr.
 +
 
 +
Image:Gr30ng099_1hrb7T.png | Transconjugants at T = 0.7 hr.
 +
 
 +
Image:Gr30ng099_1hrb8T.png | Transconjugants at T = 0.8 hr.
 +
 
 +
Image:Gr30ng099_1hrb9T.png | Transconjugants at T = 0.9 hr.
 +
 
 +
Image:Gr30ng099_1hrb10T.png | Transconjugants at T = 1.0 hr.
 +
 
 +
</gallery>
 +
|}
 +
 
 +
==''SIM3''==
Parameters used:  
Parameters used:  
Line 66: Line 100:
Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:Gr40ng099_1hrb1R.png | Recipients at T = 0 hr.
-
==SIM4==
+
Image:Gr40ng099_1hrb1D.png | Donors at T = 0 hr.
 +
 
 +
Image:Gr40ng099_1hrb1T.png | Transconjugants at T = 0.1 hr.
 +
 
 +
Image:Gr40ng099_1hrb2T.png | Transconjugants at T = 0.2 hr.
 +
 
 +
Image:Gr40ng099_1hrb3T.png | Transconjugants at T = 0.3 hr.
 +
 
 +
Image:Gr40ng099_1hrb4T.png | Transconjugants at T = 0.4 hr.
 +
 
 +
Image:Gr40ng099_1hrb5T.png | Transconjugants at T = 0.5 hr.
 +
 
 +
Image:Gr40ng099_1hrb6T.png | Transconjugants at T = 0.6 hr.
 +
 
 +
Image:Gr40ng099_1hrb7T.png | Transconjugants at T = 0.7 hr.
 +
 
 +
Image:Gr40ng099_1hrb8T.png | Transconjugants at T = 0.8 hr.
 +
 
 +
Image:Gr40ng099_1hrb9T.png | Transconjugants at T = 0.9 hr.
 +
 
 +
Image:Gr40ng099_1hrb10T.png | Transconjugants at T = 1.0 hr.
 +
 
 +
</gallery>
 +
|}
 +
 
 +
 
 +
==''SIM4''==
Parameters used:  
Parameters used:  
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Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:Gr50ng099_1hrb1R.png | Recipients at T = 0 hr.
 +
 +
Image:Gr50ng099_1hrb1D.png | Donors at T = 0 hr.
 +
 +
Image:Gr50ng099_1hrb1T.png | Transconjugants at T = 0.1 hr.
 +
 +
Image:Gr50ng099_1hrb2T.png | Transconjugants at T = 0.2 hr.
 +
 +
Image:Gr50ng099_1hrb3T.png | Transconjugants at T = 0.3 hr.
 +
 +
Image:Gr50ng099_1hrb4T.png | Transconjugants at T = 0.4 hr.
 +
 +
Image:Gr50ng099_1hrb5T.png | Transconjugants at T = 0.5 hr.
 +
 +
Image:Gr50ng099_1hrb6T.png | Transconjugants at T = 0.6 hr.
 +
 +
Image:Gr50ng099_1hrb7T.png | Transconjugants at T = 0.7 hr.
 +
 +
Image:Gr50ng099_1hrb8T.png | Transconjugants at T = 0.8 hr.
 +
 +
Image:Gr50ng099_1hrb9T.png | Transconjugants at T = 0.9 hr.
 +
 +
Image:Gr50ng099_1hrb10T.png | Transconjugants at T = 1.0 hr.
 +
 +
</gallery>
 +
|}
-
==SIM5==
+
==''SIM5''==
Parameters used:  
Parameters used:  
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Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
Animation of conjugation showing all colonies:
 +
[[Image:Gr60ng099_1hr_ani_all.gif|border]]
-
==SIM6==
+
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:Gr60ng099_1hrb1R.png | Recipients at T = 0 hr.
 +
 
 +
Image:Gr60ng099_1hrb1D.png | Donors at T = 0 hr.
 +
 
 +
Image:Gr60ng099_1hrb1T.png | Transconjugants at T = 0.1 hr.
 +
 
 +
Image:Gr60ng099_1hrb2T.png | Transconjugants at T = 0.2 hr.
 +
 
 +
Image:Gr60ng099_1hrb3T.png | Transconjugants at T = 0.3 hr.
 +
 
 +
Image:Gr60ng099_1hrb4T.png | Transconjugants at T = 0.4 hr.
 +
 
 +
Image:Gr60ng099_1hrb5T.png | Transconjugants at T = 0.5 hr.
 +
 
 +
Image:Gr60ng099_1hrb6T.png | Transconjugants at T = 0.6 hr.
 +
 
 +
Image:Gr60ng099_1hrb7T.png | Transconjugants at T = 0.7 hr.
 +
 
 +
Image:Gr60ng099_1hrb8T.png | Transconjugants at T = 0.8 hr.
 +
 
 +
Image:Gr60ng099_1hrb9T.png | Transconjugants at T = 0.9 hr.
 +
 
 +
Image:Gr60ng099_1hrb10T.png | Transconjugants at T = 1.0 hr.
 +
 
 +
</gallery>
 +
|}
 +
 
 +
 
 +
==''SIM6''==
Parameters used:  
Parameters used:  
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Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:gr30ng099_1hr_ci1000b1R.png | Recipients at T = 0 hr.
-
==SIM7==
+
Image:gr30ng099_1hr_ci1000b1D.png | Donors at T = 0 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b1T.png | Transconjugants at T = 0.1 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b2T.png | Transconjugants at T = 0.2 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b3T.png | Transconjugants at T = 0.3 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b4T.png | Transconjugants at T = 0.4 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b5T.png | Transconjugants at T = 0.5 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b6T.png | Transconjugants at T = 0.6 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b7T.png | Transconjugants at T = 0.7 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b8T.png | Transconjugants at T = 0.8 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b9T.png | Transconjugants at T = 0.9 hr.
 +
 
 +
Image:gr30ng099_1hr_ci1000b10T.png | Transconjugants at T = 1.0 hr.
 +
 
 +
</gallery>
 +
|}
 +
 
 +
 
 +
==''SIM7''==
Parameters used:  
Parameters used:  
Line 109: Line 270:
Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:gr30ng099_1hr_ci5000b1R.png | Recipients at T = 0 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b1D.png | Donors at T = 0 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b1T.png | Transconjugants at T = 0.1 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b2T.png | Transconjugants at T = 0.2 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b3T.png | Transconjugants at T = 0.3 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b4T.png | Transconjugants at T = 0.4 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b5T.png | Transconjugants at T = 0.5 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b6T.png | Transconjugants at T = 0.6 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b7T.png | Transconjugants at T = 0.7 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b8T.png | Transconjugants at T = 0.8 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b9T.png | Transconjugants at T = 0.9 hr.
 +
 +
Image:gr30ng099_1hr_ci5000b10T.png | Transconjugants at T = 1.0 hr.
 +
 +
</gallery>
 +
|}
-
==SIM8==
+
==''SIM8''==
Parameters used:  
Parameters used:  
Line 121: Line 313:
Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
-
==SIM9==
+
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:gr30ng099_1hr_ci20000b1R.png | Recipients at T = 0 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b1D.png | Donors at T = 0 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b1T.png | Transconjugants at T = 0.1 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b2T.png | Transconjugants at T = 0.2 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b3T.png | Transconjugants at T = 0.3 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b4T.png | Transconjugants at T = 0.4 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b5T.png | Transconjugants at T = 0.5 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b6T.png | Transconjugants at T = 0.6 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b7T.png | Transconjugants at T = 0.7 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b8T.png | Transconjugants at T = 0.8 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b9T.png | Transconjugants at T = 0.9 hr.
 +
 
 +
Image:gr30ng099_1hr_ci20000b10T.png | Transconjugants at T = 1.0 hr.
 +
 
 +
</gallery>
 +
|}
 +
 
 +
==''SIM9''==
Parameters used:  
Parameters used:  
Line 129: Line 352:
Ratio of Donors to Recipients = 1
Ratio of Donors to Recipients = 1
 +
 +
{|border = "0"
 +
|-
 +
|rowspan="4"|
 +
<gallery widths="240px" perrow="2" heights="188px" >
 +
Image:gr30ng099_1hr_ci40000b1R.png | Recipients at T = 0 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b1D.png | Donors at T = 0 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b1T.png | Transconjugants at T = 0.1 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b2T.png | Transconjugants at T = 0.2 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b3T.png | Transconjugants at T = 0.3 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b4T.png | Transconjugants at T = 0.4 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b5T.png | Transconjugants at T = 0.5 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b6T.png | Transconjugants at T = 0.6 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b7T.png | Transconjugants at T = 0.7 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b8T.png | Transconjugants at T = 0.8 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b9T.png | Transconjugants at T = 0.9 hr.
 +
 +
Image:gr30ng099_1hr_ci40000b10T.png | Transconjugants at T = 1.0 hr.
 +
 +
</gallery>
 +
|}
[[Team:TUDelft/Modeling_Conjugation|<< Back to Modeling Conjugation]]
[[Team:TUDelft/Modeling_Conjugation|<< Back to Modeling Conjugation]]
{{Template:TUDelftiGEM2009_end}}
{{Template:TUDelftiGEM2009_end}}

Latest revision as of 20:15, 21 October 2009

Conjugation Modeling Plots

Here is a selection of the various simulations made.

SIM1

Parameters used:

gr = 20 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM2

Parameters used:

gr = 30 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Animation of conjugation showing all colonies: Gr30ng099 1hr ani all.gif

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM3

Parameters used:

gr = 40 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM4

Parameters used:

gr = 50 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM5

Parameters used:

gr = 60 μm/hr

λ = 5.76 CFU/mm2 (Nd = 10000)

Ratio of Donors to Recipients = 1

Animation of conjugation showing all colonies: Gr60ng099 1hr ani all.gif

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM6

Parameters used:

gr = 30 μm/hr

λ = 1.44 CFU/mm2 (Nd = 1000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM7

Parameters used:

gr = 30 μm/hr

λ = 2.88 CFU/mm2 (Nd = 5000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.


SIM8

Parameters used:

gr = 20 μm/hr

λ = 11.53 CFU/mm2 (Nd = 20000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

SIM9

Parameters used: gr = 20 μm/hr

λ = 23.06 CFU/mm2 (Nd = 40000)

Ratio of Donors to Recipients = 1

Recipients at T = 0 hr.

Donors at T = 0 hr.

Transconjugants at T = 0.1 hr.

Transconjugants at T = 0.2 hr.

Transconjugants at T = 0.3 hr.

Transconjugants at T = 0.4 hr.

Transconjugants at T = 0.5 hr.

Transconjugants at T = 0.6 hr.

Transconjugants at T = 0.7 hr.

Transconjugants at T = 0.8 hr.

Transconjugants at T = 0.9 hr.

Transconjugants at T = 1.0 hr.

<< Back to Modeling Conjugation

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