Team:Paris/Transduction testing

From 2009.igem.org

(Difference between revisions)
(→Transduction)
(→Fusion)
 
(29 intermediate revisions not shown)
Line 110: Line 110:
|width="300px" ; bgcolor="#CBD1FD"| Column 3
|width="300px" ; bgcolor="#CBD1FD"| Column 3
|width="300px" ; bgcolor="#BCCDFD"| Column 4
|width="300px" ; bgcolor="#BCCDFD"| Column 4
-
 
|- style="background: #bebebe; text-align: center;"
|- style="background: #bebebe; text-align: center;"
Line 117: Line 116:
AidA and Linker : Design, synthesize and order in two parts due to the seize.
AidA and Linker : Design, synthesize and order in two parts due to the seize.
-
|bgcolor="#E0E3FE"|'''PCR :'''
+
|bgcolor="#E0E3FE"|-
-
|bgcolor="#CBD1FD"|'''PCR :'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''PCR :'''
+
|bgcolor="#BCCDFD"|-
 +
 
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
Line 126: Line 126:
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification on gel :'''
+
|bgcolor="#E0E3FE"|-
-
 
+
|bgcolor="#CBD1FD"|-
-
-
+
|bgcolor="#BCCDFD"|-
-
 
+
-
|bgcolor="#CBD1FD"|'''Verification on gel :'''
+
-
 
+
-
-
+
-
|bgcolor="#BCCDFD"|'''Verification on gel :'''
+
-
 
+
-
-
+
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
Line 142: Line 135:
ok
ok
-
|bgcolor="#E0E3FE"|'''Purification on gel :'''
+
|bgcolor="#E0E3FE"|-
-
-
+
|bgcolor="#CBD1FD"|-
-
 
+
|bgcolor="#BCCDFD"|-
-
|bgcolor="#CBD1FD"|'''Purification on gel :'''
+
-
 
+
-
-
+
-
|bgcolor="#BCCDFD"|'''Purification on gel :'''
+
-
 
+
-
-
+
Line 171: Line 158:
|bgcolor="#CBD1FD"|'''Digestion:'''  
|bgcolor="#CBD1FD"|'''Digestion:'''  
-
|bgcolor="#BCCDFD"|'''Digestion:'''
+
none
 +
|bgcolor="#BCCDFD"|-
 +
 
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''Verification digestion:'''
+
|bgcolor="#F8F8F8"|'''Digestion checking:'''
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification digestion:'''
+
|bgcolor="#E0E3FE"|'''Digestion checking:'''
 +
ok
-
-
 
-
|bgcolor="#CBD1FD"|'''Verification digestion:'''
+
|bgcolor="#CBD1FD"|'''Digestion checking:'''
 +
none
-
-
+
 
-
|bgcolor="#BCCDFD"|'''Verification digestion:'''
+
|bgcolor="#BCCDFD"|
-
-
Line 201: Line 191:
|bgcolor="#CBD1FD"|'''Ligation:'''  
|bgcolor="#CBD1FD"|'''Ligation:'''  
-
|bgcolor="#BCCDFD"|'''Ligation:'''
+
none
 +
|bgcolor="#BCCDFD"|-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
Line 213: Line 204:
|bgcolor="#CBD1FD"|'''Colony PCR :'''
|bgcolor="#CBD1FD"|'''Colony PCR :'''
 +
none
-
-
+
|bgcolor="#BCCDFD"|-
-
|bgcolor="#BCCDFD"|'''Colony PCR :'''
+
-
 
+
-
ok
+
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
Line 229: Line 218:
|bgcolor="#CBD1FD"|'''Miniprep:'''
|bgcolor="#CBD1FD"|'''Miniprep:'''
 +
none
-
-
+
|bgcolor="#BCCDFD"|-
-
 
+
-
|bgcolor="#BCCDFD"|'''Miniprep:'''
+
-
 
+
-
done
+
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
|bgcolor="#F8F8F8"|'''Sequencing :'''
|bgcolor="#F8F8F8"|'''Sequencing :'''
-
 
unecessary  
unecessary  
|bgcolor="#E0E3FE"|'''Sequencing :'''
|bgcolor="#E0E3FE"|'''Sequencing :'''
-
 
+
none
-
unecessary
+
|bgcolor="#CBD1FD"|'''Sequencing :'''
|bgcolor="#CBD1FD"|'''Sequencing :'''
 +
none
-
-
 
-
|bgcolor="#BCCDFD"|'''Sequencing :'''
 
-
unecessary
+
|bgcolor="#BCCDFD"|-
|- style="background: #d8d8d8; text-align: center;"   
|- style="background: #d8d8d8; text-align: center;"   
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|bgcolor="#CBD1FD"|'''Stock glycerol'''
|bgcolor="#CBD1FD"|'''Stock glycerol'''
-
-
+
none
-
|bgcolor="#BCCDFD"|'''Stock glycerol'''
+
|bgcolor="#BCCDFD"|-
-
-
 
|}
|}
Line 288: Line 270:
{|
{|
-
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold; "
+
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold;font-size:14px "
-
|width="300px" ; bgcolor="#F8F8F8"| column 1
+
|width="300px" ; bgcolor="#F8F8F8"| Column 1
-
|width="300px" ; bgcolor="#E0E3FE"| column 2
+
|width="300px" ; bgcolor="#E0E3FE"| Column 2
-
|width="300px" ; bgcolor="#CBD1FD"| column 3
+
|width="300px" ; bgcolor="#CBD1FD"| Column 3
-
|width="300px" ; bgcolor="#BCCDFD"| column 4
+
|width="300px" ; bgcolor="#BCCDFD"| Column 4
-
 
+
|- style="background: #bebebe; text-align: center;"
|- style="background: #bebebe; text-align: center;"
Line 306: Line 287:
Fos : previously done
Fos : previously done
-
|bgcolor="#E0E3FE"|'''PCR :'''
+
|bgcolor="#E0E3FE"|-
-
|bgcolor="#CBD1FD"|'''PCR :'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''PCR :'''
+
|bgcolor="#BCCDFD"|-
 +
 
-
Fos : design and order.
 
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
Line 317: Line 298:
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification on gel :'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Verification on gel :'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''Verification on gel :'''
+
|bgcolor="#BCCDFD"|-
-
 
+
-
ok
+
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
Line 333: Line 312:
ok
ok
-
|bgcolor="#E0E3FE"|'''Purification on gel :'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Purification on gel :'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''Purification on gel :'''
+
|bgcolor="#BCCDFD"|
Line 358: Line 337:
|bgcolor="#E0E3FE"|'''Digestion:'''  
|bgcolor="#E0E3FE"|'''Digestion:'''  
-
|bgcolor="#CBD1FD"|'''Digestion:'''
+
none
-
|bgcolor="#BCCDFD"|'''Digestion:'''
+
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
-
Fos E/X and E/P
 
-
PSB1A3 E/P
 
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''Verification digestion:'''
+
|bgcolor="#F8F8F8"|'''Digestion checking:'''
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification digestion:'''
+
|bgcolor="#E0E3FE"|'''Digestion checking:'''
-
 
+
-
-
+
-
|bgcolor="#CBD1FD"|'''Verification digestion:'''
+
none
 +
|bgcolor="#CBD1FD"|
 +
-
 +
|bgcolor="#BCCDFD"|
-
-
-
|bgcolor="#BCCDFD"|'''Verification digestion:'''
 
-
 
-
ok
 
-
 
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
Line 390: Line 365:
|bgcolor="#E0E3FE"|'''Ligation:'''  
|bgcolor="#E0E3FE"|'''Ligation:'''  
-
|bgcolor="#CBD1FD"|'''Ligation:'''
+
none
-
|bgcolor="#BCCDFD"|'''Ligation:'''
+
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|'-
 +
 
-
Fos E/P :: PSB1A3 E/P
 
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
Line 400: Line 376:
ok
ok
-
|bgcolor="#E0E3FE"|'''Colony PCR :'''
+
|bgcolor="#E0E3FE"|'''Colony PCR:'''
 +
none
-
-
+
|bgcolor="#CBD1FD"|-
-
 
+
-
|bgcolor="#CBD1FD"|'''Colony PCR :'''
+
-
-
-
|bgcolor="#BCCDFD"|'''Colony PCR :'''
+
|bgcolor="#BCCDFD"|-
-
 
+
-
-
Line 417: Line 391:
|bgcolor="#E0E3FE"|'''Miniprep:'''
|bgcolor="#E0E3FE"|'''Miniprep:'''
-
-
+
none
-
|bgcolor="#CBD1FD"|'''Miniprep:'''
+
|bgcolor="#CBD1FD"|-
-
 
+
|bgcolor="#BCCDFD"|-
-
-
+
-
 
+
-
|bgcolor="#BCCDFD"|'''Miniprep:'''
+
-
 
+
-
ok
+
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
|bgcolor="#F8F8F8"|'''Sequencing :'''
|bgcolor="#F8F8F8"|'''Sequencing :'''
-
-
+
-ok
|bgcolor="#E0E3FE"|'''Sequencing :'''
|bgcolor="#E0E3FE"|'''Sequencing :'''
-
-
+
-none
-
|bgcolor="#CBD1FD"|'''Sequencing :'''
+
|bgcolor="#CBD1FD"|'-
-
 
+
|bgcolor="#BCCDFD"|-
-
-
+
-
|bgcolor="#BCCDFD"|'''Sequencing :'''
+
-
 
+
-
-
+
|- style="background: #d8d8d8; text-align: center;"   
|- style="background: #d8d8d8; text-align: center;"   
|bgcolor="#F8F8F8"| '''Stock glycerol:'''
|bgcolor="#F8F8F8"| '''Stock glycerol:'''
 +
none
unecessary
unecessary
|bgcolor="#E0E3FE"|'''Stock glycerol'''
|bgcolor="#E0E3FE"|'''Stock glycerol'''
-
-
+
none
-
|bgcolor="#CBD1FD"|'''Stock glycerol'''
+
|bgcolor="#CBD1FD"|-
-
 
+
|bgcolor="#BCCDFD"|-
-
-
+
-
|bgcolor="#BCCDFD"|'''Stock glycerol'''
+
-
-
Line 496: Line 460:
-
the transduction system of the fec operon (FecA, FecR, FecI).
+
The transduction system of the fec operon (FecA, FecR, FecI).
-
 
+
Line 503: Line 466:
<center><font style="color:green;font-weight:bold; font-size:16px">The green color means the experiment was a success</font></center>
<center><font style="color:green;font-weight:bold; font-size:16px">The green color means the experiment was a success</font></center>
 +
 +
[[Image:Paris_construct_9_pFec-RFP.jpg  |800px|center|plasmid = ]]
[[Image:Paris_construct_9_pFec-RFP.jpg  |800px|center|plasmid = ]]
-
[[Image:Paris_construc_6_pfec.jpg  |800px|center|plasmid = ]]
 
-
{|
 
-
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold; "
 
-
|width="300px" ; bgcolor="#F8F8F8"| column 1
 
-
|width="300px" ; bgcolor="#E0E3FE"| column 2
 
-
|width="300px" ; bgcolor="#CBD1FD"| column 3
 
-
|width="300px" ; bgcolor="#BCCDFD"| column 4
 
 +
 +
<font style="color:black;font-weight:bold; font-size:16px"><I>'''Experiments ran :'''</I></font>
 +
 +
 +
{|
 +
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold;font-size:14px "
 +
|width="300px" ; bgcolor="#F8F8F8"| Column 1
 +
|width="300px" ; bgcolor="#E0E3FE"| Column 2
 +
|width="300px" ; bgcolor="#CBD1FD"| Column 3
 +
|width="300px" ; bgcolor="#BCCDFD"| Column 4
|- style="background: #bebebe; text-align: center;"
|- style="background: #bebebe; text-align: center;"
Line 539: Line 507:
   
   
-
|bgcolor="#E0E3FE"|'''PCR :'''
+
|bgcolor="#E0E3FE"|-
-
|bgcolor="#CBD1FD"|'''PCR :'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''PCR :'''
+
|bgcolor="#BCCDFD"|-
-
 
+
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
|bgcolor="#F8F8F8"|'''Verification on gel :'''
|bgcolor="#F8F8F8"|'''Verification on gel :'''
Line 548: Line 515:
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification on gel :'''
+
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
|- style="background: #bebebe; text-align: center;" 
 +
|bgcolor="#F8F8F8"|'''Purification on gel :'''
 +
 +
ok
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
 +
 +
 +
|- style="background: #d8d8d8; text-align: center;"
 +
|bgcolor="#F8F8F8"|'''Digestion:'''
 +
 +
Ter E/X
 +
 +
mRFP E/S
 +
 +
|bgcolor="#E0E3FE"| -
 +
|bgcolor="#CBD1FD"| -
 +
|bgcolor="#BCCDFD"| -
 +
 +
|- style="background: #bebebe; text-align: center;" 
 +
|bgcolor="#F8F8F8"|'''Digestion checking:'''
 +
 +
ok
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
 +
 +
|- style="background: #d8d8d8; text-align: center;"
 +
|bgcolor="#F8F8F8"|'''Ligation:'''
 +
 +
mRFP E/S Ter E/X in Ter vector
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"| -
 +
 +
|- style="background: #bebebe; text-align: center;" 
 +
|bgcolor="#F8F8F8"|'''Colony PCR:'''
 +
 +
ok
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
 +
|- style="background: #d8d8d8; text-align: center;"
 +
|bgcolor="#F8F8F8"|'''Miniprep:'''
 +
 +
ok
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
 +
|- style="background: #bebebe; text-align: center;" 
 +
|bgcolor="#F8F8F8"|'''Sequencing :'''
 +
ok
 +
 +
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Verification on gel :'''
+
|bgcolor="#CBD1FD"|
 +
-
 +
|bgcolor="#BCCDFD"|
 +
-
 +
|- style="background: #d8d8d8; text-align: center;" 
 +
|bgcolor="#F8F8F8"| '''Stock glycerol:'''
-
-
-
|bgcolor="#BCCDFD"|'''Verification on gel :'''
+
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
|}
 +
 +
 +
 +
 +
 +
<center><font style="color:green;font-weight:bold; font-size:16px">The green color means the experiment was a success</font></center>
 +
 +
 +
 +
[[Image:Paris_construc_6_pfec.jpg  |800px|center|plasmid = ]]
 +
 +
 +
 +
 +
 +
 +
<font style="color:black;font-weight:bold; font-size:16px"><I>'''Experiments ran :'''</I></font>
 +
 +
 +
 +
{|
 +
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold;font-size:14px "
 +
|width="300px" ; bgcolor="#F8F8F8"| Column 1
 +
|width="300px" ; bgcolor="#E0E3FE"| Column 2
 +
|width="300px" ; bgcolor="#CBD1FD"| Column 3
 +
|width="300px" ; bgcolor="#BCCDFD"| Column 4
 +
 +
|- style="background: #bebebe; text-align: center;"
 +
|bgcolor="#F8F8F8"|'''PCR :'''
 +
 +
pFec matrix: K12 DNA
 +
 +
Oligo:  TM
 +
 +
FecI matrix: K12 DNA
 +
 +
Oligo:  TM
 +
 +
FecR 1-85  matrix: K12 DNA
 +
 +
Oligo:  TM
 +
 +
mRFP matrix: PSB1A3 (previous IGEM plate)
 +
 +
Oligo:  TM
 +
 +
 +
 +
|bgcolor="#E0E3FE"|-
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
 +
 +
|- style="background: #d8d8d8; text-align: center;"
 +
|bgcolor="#F8F8F8"|'''Verification on gel :'''
 +
 +
ok
 +
 +
|bgcolor="#E0E3FE"|
 +
 +
-
 +
 +
|bgcolor="#CBD1FD"|
 +
-
 +
|bgcolor="#BCCDFD"|
-
-
Line 564: Line 669:
ok
ok
-
|bgcolor="#E0E3FE"|'''Purification on gel :'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Purification on gel :'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''Purification on gel :'''
+
|bgcolor="#BCCDFD"|
-
-
Line 578: Line 683:
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''digestion:'''  
+
|bgcolor="#F8F8F8"|'''Digestion:'''  
Ter E/X
Ter E/X
Line 584: Line 689:
mRFP E/S
mRFP E/S
-
|bgcolor="#E0E3FE"|'''digestion:'''
+
|bgcolor="#E0E3FE"|-
-
|bgcolor="#CBD1FD"|'''digestion:'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''digestion:'''
+
|bgcolor="#BCCDFD"|-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''verification digestion:'''
+
|bgcolor="#F8F8F8"|'''Verification digestion:'''
ok
ok
-
|bgcolor="#E0E3FE"|'''verification digestion:'''
+
|bgcolor="#E0E3FE"|
-
 
+
-
-
-
|bgcolor="#CBD1FD"|'''verification digestion:'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''verification digestion:'''
+
|bgcolor="#BCCDFD"|
-
-
Line 606: Line 710:
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''ligation:'''  
+
|bgcolor="#F8F8F8"|'''Ligation:'''  
mRFP E/S Ter E/X in Ter vector
mRFP E/S Ter E/X in Ter vector
-
|bgcolor="#E0E3FE"|'''ligation:'''
+
|bgcolor="#E0E3FE"|-
-
|bgcolor="#CBD1FD"|'''ligation:'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''ligation:'''
+
|bgcolor="#BCCDFD"| -
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''PCR colo :'''
+
|bgcolor="#F8F8F8"|'''Colony PCR:'''
ok
ok
-
|bgcolor="#E0E3FE"|'''PCR colo :'''
+
|bgcolor="#E0E3FE"|-
-
-
-
|bgcolor="#CBD1FD"|'''PCR colo :'''
+
|bgcolor="#CBD1FD"|-
-
-
-
|bgcolor="#BCCDFD"|'''PCR colo :'''
+
|bgcolor="#BCCDFD"|
-
-
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''miniprep:'''
+
|bgcolor="#F8F8F8"|'''Miniprep:'''
ok
ok
-
|bgcolor="#E0E3FE"|'''miniprep:'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''miniprep:'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''miniprep:'''
+
|bgcolor="#BCCDFD"|
-
 
+
-
-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''sequencing :'''
+
|bgcolor="#F8F8F8"|'''Sequencing :'''
-
 
+
ok
-
-
+
-
|bgcolor="#E0E3FE"|'''sequencing :'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''sequencing :'''
+
|bgcolor="#CBD1FD"|
-
 
+
-
-
-
|bgcolor="#BCCDFD"|'''sequencing :'''
+
|bgcolor="#BCCDFD"|
-
 
+
-
-
|- style="background: #d8d8d8; text-align: center;"   
|- style="background: #d8d8d8; text-align: center;"   
Line 666: Line 766:
-
-
-
|bgcolor="#E0E3FE"|'''Stock glycerol'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Stock glycerol'''
+
|bgcolor="#CBD1FD"|
-
 
+
-
-
-
|bgcolor="#BCCDFD"|'''Stock glycerol'''
+
|bgcolor="#BCCDFD"|
-
-
Line 693: Line 792:
 +
<font style="color:black;font-weight:bold; font-size:16px"><I>'''Experiments ran :'''</I></font>
-
 
-
Time required : A lOT !!!!!
 
-
 
-
 
-
 
-
 
-
Experiments ran :
 
{|
{|
-
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold; "
+
|- style="background: #0a3585; text-align: center; color:black; font-weight:bold;font-size:14px "
-
|width="300px" ; bgcolor="#F8F8F8"| column 1
+
|width="300px" ; bgcolor="#F8F8F8"| Column 1
-
|width="300px" ; bgcolor="#E0E3FE"| column 2
+
|width="300px" ; bgcolor="#E0E3FE"| Column 2
-
|width="300px" ; bgcolor="#CBD1FD"| column 3
+
|width="300px" ; bgcolor="#CBD1FD"| Column 3
-
|width="300px" ; bgcolor="#BCCDFD"| column 4
+
|width="300px" ; bgcolor="#BCCDFD"| Column 4
-
 
+
|- style="background: #bebebe; text-align: center;"
|- style="background: #bebebe; text-align: center;"
|bgcolor="#F8F8F8"|'''PCR :'''  
|bgcolor="#F8F8F8"|'''PCR :'''  
-
TatABCE matrix :
+
FecA matrix:   K12
 +
 
 +
pBAD:
 +
 
 +
OmpAs: pINR2
-
|bgcolor="#E0E3FE"|'''PCR :'''
+
|bgcolor="#E0E3FE"|'-
-
|bgcolor="#CBD1FD"|'''PCR :'''
+
|bgcolor="#CBD1FD"|-
-
|bgcolor="#BCCDFD"|'''PCR :'''
+
|bgcolor="#BCCDFD"|-
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
Line 725: Line 821:
ok
ok
-
|bgcolor="#E0E3FE"|'''Verification on gel :'''
+
|bgcolor="#E0E3FE"|
-
-
-
|bgcolor="#CBD1FD"|'''Verification on gel :'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''Verification on gel :'''
+
|bgcolor="#BCCDFD"|-
-
-
Line 741: Line 837:
ok
ok
-
|bgcolor="#E0E3FE"|'''Purification on gel :'''
+
|bgcolor="#E0E3FE"|-
-
-
-
|bgcolor="#CBD1FD"|'''Purification on gel :'''
+
|bgcolor="#CBD1FD"|-
-
-
-
|bgcolor="#BCCDFD"|'''Purification on gel :'''
+
|bgcolor="#BCCDFD"|-
-
-
Line 755: Line 851:
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''digestion:'''  
+
|bgcolor="#F8F8F8"|'''Digestion:'''  
-
TatABCE
+
pBAD  E/S
-
|bgcolor="#E0E3FE"|'''digestion:'''  
+
|bgcolor="#E0E3FE"|'''Digestion:'''  
-
|bgcolor="#CBD1FD"|'''digestion:'''
+
none
-
|bgcolor="#BCCDFD"|'''digestion:'''
+
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''verification digestion:'''
+
|bgcolor="#F8F8F8"|'''Digestion checking'''
ok
ok
-
|bgcolor="#E0E3FE"|'''verification digestion:'''
+
|bgcolor="#E0E3FE"|'''Digestion checking'''
-
-
+
none
-
|bgcolor="#CBD1FD"|'''verification digestion:'''
+
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''verification digestion:'''
+
|bgcolor="#BCCDFD"|
-
 
+
-
-
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''ligation:'''  
+
|bgcolor="#F8F8F8"|'''Ligation:'''  
-
TatABCE
+
none
-
|bgcolor="#E0E3FE"|'''ligation:'''  
+
|bgcolor="#E0E3FE"|'''Ligation:'''
-
|bgcolor="#CBD1FD"|'''ligation:'''
+
none
-
|bgcolor="#BCCDFD"|'''ligation:'''
+
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''PCR colo :'''
+
|bgcolor="#F8F8F8"|'''Colony PCR :'''
-
ok
+
none
-
|bgcolor="#E0E3FE"|'''PCR colo :'''
+
|bgcolor="#E0E3FE"|'''Colony PCR :'''
 +
none
-
-
+
|bgcolor="#CBD1FD"|
-
 
+
-
|bgcolor="#CBD1FD"|'''PCR colo :'''
+
-
-
-
|bgcolor="#BCCDFD"|'''PCR colo :'''
+
|bgcolor="#BCCDFD"|
-
 
+
-
-
|- style="background: #d8d8d8; text-align: center;"
|- style="background: #d8d8d8; text-align: center;"
-
|bgcolor="#F8F8F8"|'''miniprep:'''
+
|bgcolor="#F8F8F8"|'''Miniprep'''
-
STOPPED
+
none
-
|bgcolor="#E0E3FE"|'''miniprep:'''
+
|bgcolor="#E0E3FE"|'''Miniprep'''
-
-
+
none
-
 
+
-
|bgcolor="#CBD1FD"|'''miniprep:'''
+
 +
|bgcolor="#CBD1FD"|
-
-
-
|bgcolor="#BCCDFD"|'''miniprep:'''
+
|bgcolor="#BCCDFD"|
-
-
|- style="background: #bebebe; text-align: center;"   
|- style="background: #bebebe; text-align: center;"   
-
|bgcolor="#F8F8F8"|'''sequencing :'''
+
|bgcolor="#F8F8F8"|'''Sequencing'''
 +
none
-
-
+
|bgcolor="#E0E3FE"|'''Sequencing'''
 +
none
-
|bgcolor="#E0E3FE"|'''sequencing :'''
+
|bgcolor="#CBD1FD"|
-
-
-
 
+
|bgcolor="#BCCDFD"|
-
|bgcolor="#CBD1FD"|'''sequencing :'''
+
-
 
+
-
-
+
-
|bgcolor="#BCCDFD"|'''sequencing :'''
+
-
 
+
-
-
|- style="background: #d8d8d8; text-align: center;"   
|- style="background: #d8d8d8; text-align: center;"   
|bgcolor="#F8F8F8"| '''Stock glycerol:'''
|bgcolor="#F8F8F8"| '''Stock glycerol:'''
 +
none
-
-
+
|bgcolor="#E0E3FE"| '''Stock glycerol:'''
-
|bgcolor="#E0E3FE"|'''Stock glycerol'''
+
none
-
 
+
-
-
+
-
 
+
-
|bgcolor="#CBD1FD"|'''Stock glycerol'''
+
-
 
+
-
-
+
-
|bgcolor="#BCCDFD"|'''Stock glycerol'''
+
 +
|bgcolor="#CBD1FD"|-
 +
|bgcolor="#BCCDFD"|
-
-
|}
|}

Latest revision as of 03:38, 22 October 2009

iGEM > Paris > WetLab > Reception


Contents

WetLab - Reception

In this section we have two kinds of experiments :


  1. Fusion : the construction required for the fusion of the vesicles that contain the message with the receiver.
  2. Transduction : the construction of the system that will be able de decypher the message.


The first part deals with G3P , OmpAL , Jun, Fos , and AIDA protein. the second with the transduction system of the fec operon (FecA, FecR, FecI).

Fusion

Fusion : the construction required for the fusion of the vesicles that contain the message.

G3P , OmpAL , Jun, Fos , and AIDA protein.



The green color means the experiment was a success


plasmid =




Experiments ran :


Column 1 Column 2 Column 3 Column 4
PCR :

AidA and Linker : Design, synthesize and order in two parts due to the seize.

- - -


Verification on gel :

ok

- - -
Purification on gel :

ok

- - -


Digestion:

AidA CTerm Kpn1/HindIII

AidA NTerm Kpn1/HindIII

Digestion:

AidA complete E/P

PSB1A3 E/P

We did it to obtain a biobrick first

Digestion:

none

-


Digestion checking:

ok

Digestion checking:

ok


Digestion checking:

none


-


Ligation:

AidA CTerm (Kpn1/HindIII):: aidA NTerm (Kpn1/HindIII)


Ligation:

AidA complete E/P :: PSB1A3 E/P

Ligation:

none

-
Colony pCR :

ok

Colony PCR:

ok

Colony PCR :

none

-
Miniprep:

done

Miniprep:

done

Miniprep:

none

-
Sequencing :

unecessary

Sequencing :

none

Sequencing :

none


-
Stock glycerol:

-

Stock glycerol

S75

Stock glycerol

none

-




The green color means the experiment was a success


plasmid =




Experiments ran :


Column 1 Column 2 Column 3 Column 4
PCR :

Jun *: design and order to be a a mutant incapable to form homodimere.

pLac : previously done

SSOmpA : previously done

Fos : previously done

- - -


Verification on gel :

ok

-

-

-
Purification on gel :

ok

-

-



Digestion:

pLac E/X

ssOmpA E/S

Jun E/X and E/P

PSB1A3 E/P

Digestion:

none

- -


Digestion checking:

ok

Digestion checking:

none

-

-

Ligation:

pLac on PSB2K3 E/X :: ssOmpA E/S

Jun E/P :: PSB1A3 E/P

Ligation:

none

- '-


Colony PCR:

ok

Colony PCR:

none

-

-

-

-

Miniprep:

ok

Miniprep:

none

- -
Sequencing :

-ok

Sequencing :

-none

'- -
Stock glycerol:

none

unecessary

Stock glycerol

none

- -

-



G3P

Even though it has not been realized, we planned to do these experiments to verify that G3P is expressed into the bacterial surface and induces the membranal fusion.


  • Surface expression of G3P

Surface expression of G3P could be seen with antibodies.
Culture of bacteria expressing OmpA-linker-G3P construction on a membrane. Adding antibodies anti-G3P. Revelation should shows whether G3P is expressed at the surface of bacteria.


  • Floculation test

"Fusion" could be approached by a flocculation test.
Two separate bacterial population growth on media. A population (F-) expressing the OmpA-linker_G3P construction and a population (F +) which express sexual pilus (by expression of the episome F).
Then we growth bacteria without agitation and we look (compared to culture controls) the speed of sedimentation. Faster sedimentation is due to an interaction between bacterial populations showing an increase of contact time. At vesicle level, it induce membrane fusion.


Transduction

Transduction : the construction of the system that will be able de decypher the message.


The transduction system of the fec operon (FecA, FecR, FecI).



The green color means the experiment was a success


plasmid =




Experiments ran :


Column 1 Column 2 Column 3 Column 4
PCR :

pFec matrix: K12 DNA

Oligo: TM

FecI matrix: K12 DNA

Oligo: TM

FecR 1-85 matrix: K12 DNA

Oligo: TM

mRFP matrix: PSB1A3 (previous IGEM plate)

Oligo: TM


- - -
Verification on gel :

ok

- - -
Purification on gel :

ok

- - -


Digestion:

Ter E/X

mRFP E/S

- - -
Digestion checking:

ok

- - -


Ligation:

mRFP E/S Ter E/X in Ter vector

- - -
Colony PCR:

ok

- - -
Miniprep:

ok

- - -
Sequencing :

ok

-

-

-

Stock glycerol:

-

- - -




The green color means the experiment was a success


plasmid =




Experiments ran :


Column 1 Column 2 Column 3 Column 4
PCR :

pFec matrix: K12 DNA

Oligo: TM

FecI matrix: K12 DNA

Oligo: TM

FecR 1-85 matrix: K12 DNA

Oligo: TM

mRFP matrix: PSB1A3 (previous IGEM plate)

Oligo: TM


- - -
Verification on gel :

ok

-

-

-

Purification on gel :

ok

-

-

-


Digestion:

Ter E/X

mRFP E/S

- - -
Verification digestion:

ok

-

-

-


Ligation:

mRFP E/S Ter E/X in Ter vector

- - -
Colony PCR:

ok

-

-

-

-

-

Miniprep:

ok

-

-

-

Sequencing :

ok

-

-

-

Stock glycerol:

-

-

-

-




The green color means the experiment was a success


plasmid =




Experiments ran :


Column 1 Column 2 Column 3 Column 4
PCR :

FecA matrix: K12

pBAD:

OmpAs: pINR2

'- - -
Verification on gel :

ok

-

-

-

-

Purification on gel :

ok

-

-

-

-

-

-


Digestion:

pBAD E/S

Digestion:

none

- -
Digestion checking

ok

Digestion checking

none

-

-


Ligation:

none

Ligation:

none

- -
Colony PCR :

none

Colony PCR :

none

-

-

Miniprep

none

Miniprep

none

-

-

Sequencing

none

Sequencing

none

-

-

Stock glycerol:

none

Stock glycerol:

none

-

-


Retrieved from "http://2009.igem.org/Team:Paris/Transduction_testing"