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Team:Paris/Transduction modeling Deterministic and Stochastic Simulations
From 2009.igem.org
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To study our model, we decided to run two type of simulations. | To study our model, we decided to run two type of simulations. | ||
First of all, we have started with deterministic simulation in order to see whether our description of the chemical cascade reflected our understanding and expected behaviour of the reception system. | First of all, we have started with deterministic simulation in order to see whether our description of the chemical cascade reflected our understanding and expected behaviour of the reception system. | ||
| - | Then, | + | Then, to check whether our system was sensible to molecular noise, we decided to run exact stochastic simulations based on the Gillespie method. |
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| + | ===Deterministic Model=== | ||
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| + | ===Stochastic Simulations=== | ||
Revision as of 13:41, 20 September 2009
iGEM > Paris > Reception > Modeling
Modeling
- Introduction
- A. The Fec Operon as used in our system : chemical equations and kinetics
- B. Deterministic and Stochastic Simulations
- C. Results and discussion
Deterministic and Stochastic Simulations
To study our model, we decided to run two type of simulations. First of all, we have started with deterministic simulation in order to see whether our description of the chemical cascade reflected our understanding and expected behaviour of the reception system. Then, to check whether our system was sensible to molecular noise, we decided to run exact stochastic simulations based on the Gillespie method.
Deterministic Model
ff
