Team:Paris/Transduction modeling Deterministic and Stochastic Simulations

Revision as of 19:31, 20 September 2009 by CChabbert (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Protocols Freezer NoteBook Bibliography Parts WetLab DryLab

Team Collaborations Contacts Acknowledgements Links

Contents 1 Modeling 2 Deterministic and Stochastic Simulations 2.1 Deterministic Model 2.2 Stochastic Simulations

Modeling

• Introduction
• A. The Fec Operon as used in our system : chemical equations and kinetics
• B. Deterministic and Stochastic Simulations
• C. Results and discussion

Deterministic and Stochastic Simulations

To study our model, we decided to run two type of simulations. First of all, we have started with deterministic simulation in order to see whether our description of the chemical cascade reflected our understanding and expected behaviour of the reception system. Then, to check whether our system was sensible to molecular noise, we decided to run exact stochastic simulations based on the Gillespie method.

Deterministic Model

ff

Stochastic Simulations