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Team:Edinburgh/biology(references)
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Biology - References
Batchelor, E., and Goulian, M. Imaging OmpR localization in Escherichia coli. Molecular Microbiology 59(6),1767-78 (2006).
Baumgartner, J. W., Kim, C., Brisette, R. E., Inoue, M., Park, C., and Hazelbauer, G. L. Transmembrane signalling by a hybrid protein: communication from the domain of chemoreceptor Trg that recognises sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ. Journal of Bacteriology, 1157-1163 (1994).
Beaumont, H. J. E., Lens, S. I., Reijnders, W. N. M., Westerhoff, H. V., and Spanning, R. J. M. Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor. Molecular Microbiology 54 (1), 148-158, 2004.
Binks, P.R., French, C.E., Nicklin, S., & Bruce, N.C. Degradation of pentaerythritol tetranitrate by Enterobacter cloacae PB2. Applied and Environmental Microbiology 62(4), 1214-1219 (1996).
Colepicolo, P., Cho, K. W., Poinar, G. O., and Hastings, J.W. Growth and luminescence of the bacterium Xenorhabdus luminescens from a human wound. Appl Environ Microbiol. 55(10), 2601–2606 (1989).
Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).
Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).
French, C. E., Nicklin, S. & Bruce, N. C. Aerobic degradation of 2,4,6-trinitrotoluene by Enterobacter cloacae pb2 and by pentaerythritol tetranitrate reductase. Appl. Environ. Microbiol. 64, 2864-2868 (1998).
Jenkins, T., et al. Chemical signatures of tnt-filled land mines. Talanta 54, 501-513 (2001).
Lee, C. Y., and Meighrn, E. A. Expression and DNA Sequence of the Gene Coding for the lux-Specific Fatty Acyl-CoA Reductase from Photobacterium phosphoreum. The Journal of Microbiology. 38(2), 80-87 (2000).
Lin, H. Y., Bledsoe, P.J., and Stewart V. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen- responsive regulator Fnr in Escherichia coli K-12. J Bacteriol. 189(21),7539-48 (2007).
Looger, L. L., Dwyer, M. A., Smith J. J., and Hellinga, H. W. Computational design of receptor and sensor proteins with novel functions. Nature 423, 185-190 (2003).
Maeda, S., and Mizuno T. Evidence for multiple Omp-R binding sites in the upstream activation sequence of the ompC promoter in Escherichia coli: a single OmpR-binding site is capable of activating the promoter. J. Bacteriol. 172 (1), 501-503 (1990).
Mancini, J. A., Boylan, M., Soly, R. R., Graham, A. F., and Meighen, E. A. Cloning and Expression of the Photobacterium phosphoreum Luminescence System Demonstrates a Unique lux Gene Organization. The Journal of Biological Chemistry 263 (28), 14308-14314 (1988).
Miyamoto, C., Byers, D., Graham, A. F., and Meighen E. A. Expression of bioluminescence by Escherichia coli Containing Recombinant Vibrio harveyi DNA. Journal of Bacteriology. 169(1), 247-253 (1987).
Miyawaki, A., Bringing bioluminescence into the picture. Nature Methods 4, 616 - 617 (2007).
O'Kane, D. J., Woodward, B., Lee, J., and Prasher, D. C. Borrowed proteins in bacterial bioluminescence. Proc Natl Acad Sci U S A. 88(4), 1100–1104 (1991).
Spiro, S. Regulators of bacterial responses to nitric oxide. FEMS Microbiology Reviews 31, 193-211, (2007).
Baumgartner, J. W., Kim, C., Brisette, R. E., Inoue, M., Park, C., and Hazelbauer, G. L. Transmembrane signalling by a hybrid protein: communication from the domain of chemoreceptor Trg that recognises sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ. Journal of Bacteriology, 1157-1163 (1994).
Beaumont, H. J. E., Lens, S. I., Reijnders, W. N. M., Westerhoff, H. V., and Spanning, R. J. M. Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor. Molecular Microbiology 54 (1), 148-158, 2004.
Binks, P.R., French, C.E., Nicklin, S., & Bruce, N.C. Degradation of pentaerythritol tetranitrate by Enterobacter cloacae PB2. Applied and Environmental Microbiology 62(4), 1214-1219 (1996).
Colepicolo, P., Cho, K. W., Poinar, G. O., and Hastings, J.W. Growth and luminescence of the bacterium Xenorhabdus luminescens from a human wound. Appl Environ Microbiol. 55(10), 2601–2606 (1989).
Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).
Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).
French, C. E., Nicklin, S. & Bruce, N. C. Aerobic degradation of 2,4,6-trinitrotoluene by Enterobacter cloacae pb2 and by pentaerythritol tetranitrate reductase. Appl. Environ. Microbiol. 64, 2864-2868 (1998).
Jenkins, T., et al. Chemical signatures of tnt-filled land mines. Talanta 54, 501-513 (2001).
Lee, C. Y., and Meighrn, E. A. Expression and DNA Sequence of the Gene Coding for the lux-Specific Fatty Acyl-CoA Reductase from Photobacterium phosphoreum. The Journal of Microbiology. 38(2), 80-87 (2000).
Lin, H. Y., Bledsoe, P.J., and Stewart V. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen- responsive regulator Fnr in Escherichia coli K-12. J Bacteriol. 189(21),7539-48 (2007).
Looger, L. L., Dwyer, M. A., Smith J. J., and Hellinga, H. W. Computational design of receptor and sensor proteins with novel functions. Nature 423, 185-190 (2003).
Maeda, S., and Mizuno T. Evidence for multiple Omp-R binding sites in the upstream activation sequence of the ompC promoter in Escherichia coli: a single OmpR-binding site is capable of activating the promoter. J. Bacteriol. 172 (1), 501-503 (1990).
Mancini, J. A., Boylan, M., Soly, R. R., Graham, A. F., and Meighen, E. A. Cloning and Expression of the Photobacterium phosphoreum Luminescence System Demonstrates a Unique lux Gene Organization. The Journal of Biological Chemistry 263 (28), 14308-14314 (1988).
Miyamoto, C., Byers, D., Graham, A. F., and Meighen E. A. Expression of bioluminescence by Escherichia coli Containing Recombinant Vibrio harveyi DNA. Journal of Bacteriology. 169(1), 247-253 (1987).
Miyawaki, A., Bringing bioluminescence into the picture. Nature Methods 4, 616 - 617 (2007).
O'Kane, D. J., Woodward, B., Lee, J., and Prasher, D. C. Borrowed proteins in bacterial bioluminescence. Proc Natl Acad Sci U S A. 88(4), 1100–1104 (1991).
Spiro, S. Regulators of bacterial responses to nitric oxide. FEMS Microbiology Reviews 31, 193-211, (2007).
Edinburgh University iGEM Team 2009
