Team:Edinburgh/biology(references)

From 2009.igem.org

(Difference between revisions)
(New page: {{:Team:Edinburgh/dropdowncss}} {{:Team:Edinburgh/helpercss}} {{:Team:Edinburgh/defaultcss2}} {{:Team:Edinburgh/defaultadvancedcss}} <html> <head> <!--[if lt IE 7]> <script type="text/j...)
 
(26 intermediate revisions not shown)
Line 45: Line 45:
#top-section {
#top-section {
         height:98px;
         height:98px;
 +
        margin-left:153px;
}
}
Line 84: Line 85:
#mainmenu {
#mainmenu {
         float:left;
         float:left;
-
width:150px;
+
width:170px;
margin-top:75px;
margin-top:75px;
border-top:6px solid #CA9A38;
border-top:6px solid #CA9A38;
border-bottom:6px solid #CA9A38;
border-bottom:6px solid #CA9A38;
 +
}
 +
 +
#Upgradebox {
 +
background-color:#dae7b4;
 +
        float:left;
 +
width:170px;
 +
margin-top:320px;
 +
        border-top:6px solid #CA9A38;
 +
        border-bottom:6px solid #CA9A38;
 +
        font-size:11px;
 +
        font-family:Arial;
 +
        color:#556B2F;
 +
}
 +
 +
#Upgradenote {
 +
padding:5%;
}
}
Line 98: Line 115:
#contentmenu {
#contentmenu {
         margin-bottom:30px;
         margin-bottom:30px;
-
         margin-left:191px;
+
         margin-left:251px;
text-decoration: none
text-decoration: none
}
}
Line 107: Line 124:
         margin-bottom:2px;
         margin-bottom:2px;
background-color: #e5e7e2;
background-color: #e5e7e2;
-
height:1050px;
+
height:1000px;
         width:795px;
         width:795px;
         font-size:11px;
         font-size:11px;
Line 134: Line 151:
background-color:#474b5b;
background-color:#474b5b;
height:20px;
height:20px;
-
width:150px;
+
width:170px;
margin-top:2px;
margin-top:2px;
margin-bottom:2px;
margin-bottom:2px;
Line 142: Line 159:
#nav {
#nav {
-
     width: 690px;
+
     width: 750px;
}
}
Line 183: Line 200:
<div id=main>
<div id=main>
<div id=leftspace>
<div id=leftspace>
 +
                  <div id="Upgradebox">
 +
            <div id="Upgradenote" align="left">
 +
                      Our WIKI is best viewed with (click title):<br /><br />
 +
                      * <a target="_blank" style="color:#00008B;text-decoration:underline;" href="http://www.microsoft.com/windows/Internet-explorer/default.aspx">Internet Explorer 8</a> <br />
 +
                      * <a target="_blank" style="color:#00008B;text-decoration:underline;" href="http://www.mozilla.com/en-US/">Firefox 3</a><br />
 +
                      * <a target="_blank" style="color:#00008B;text-decoration:underline;" href="http://get.adobe.com/flashplayer/">Adobe Flash Player 10</a> <br /><br />
 +
                      If you encounter any visual problems please upgrade your browser to the latest version in order to get the most out of our WIKI. Thank you!
 +
                    </div>
 +
                  </div>
</div>
</div>
<div id=mainmenu>
<div id=mainmenu>
-
<div id=menuitem >  <a href="#"> Overall description </a> </div>  
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28overalldescription%29"> Overall Description & Design </a> </div>
-
<div id=menuitem >  <a href="#"> Overall design </a> </div>  
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28tntsensing%29"> TNT-Sensing Pathway</a> </div>
-
<div id=menuitem >  <a href="#"> Materials and methods </a> </div>
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28nitritenitratesensing%29"> Nitrite/Nitrate-Sensing Pathway</a> </div>
-
<div id=menuitem >  <a href="#"> Biobricks </a> </div>
+
                        <div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28biobricks%29"> Biobrick Parts </a> </div>
-
<div id=menuitem >  <a href="#"> Solved problems </a> </div>
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28results%29"> Results </a> </div>
-
<div id=menuitem >  <a href="#"> Unsolved problems </a> </div>  
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28solvedproblems%29"> Problem Solving and Tips </a> </div>  
-
<div id=menuitem >  <a href="#"> Results </a> </div>
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28materialsandmethods%29"> Materials and Methods </a> </div>
-
<div id=menuitem >  <a href="#"> Glance at the future </a> </div>
+
<div id=menuitem >  <a href="https://2009.igem.org/Team:Edinburgh/biology%28references%29"> References </a> </div>
-
<div id=menuitem >  <a href="#"> References </a> </div>
+
</div>
</div>
<div id=Edinburghcontainer>
<div id=Edinburghcontainer>
<div id=contentmenu>
<div id=contentmenu>
<ul id="nav" class="dropdown dropdown-horizontal">
<ul id="nav" class="dropdown dropdown-horizontal">
-
  <li><a href="./">Home</a></li>
+
  <li><a href="https://2009.igem.org/Team:Edinburgh">Home</a></li>
-
<li><a href="./" class="dir">Project</a>
+
-
  <ul>
+
-
  <li class="dir">Introduction
+
-
<ul>
+
-
<li><a href="./">Overall description</a></li>
+
-
<li><a href="./">Overall design</a></li>
+
-
<li><a href="./">Materials and methods</a></li>
+
-
<li><a href="./">Biobricks</a></li>
+
-
<li><a href="./">Solved problems</a></li>
+
-
<li><a href="./">Unsolved problems</a></li>
+
-
<li><a href="./">Results</a></li>
+
-
<li><a href="./">Glance at the future</a></li>
+
-
<li><a href="./">References</a></li>
+
-
</ul>
+
-
  </li>
+
-
+
-
  <li class="dir">Biology
+
-
    <ul>
+
-
+
-
<li><a href="./">Project overview</a></li>
+
-
    <li><a href="./">Overall design</a></li>
+
-
<li class="dir">Materials&Methods
+
-
  <ul>
+
-
+
-
<li class="dir">Protocols
+
-
    <ul>
+
-
  <li><a href="./">Overall list</a></li>
+
-
  <li><a href="./">Composite Biobricks</a></li>                 
+
-
    </ul>
+
-
    </li>
+
-
   
+
-
<li class="dir">Primers
+
-
    <ul>
+
-
  <li><a href="./">Overall list</a></li>
+
-
      <li><a href="./">TNT Primers</a></li>                 
+
-
    </ul>
+
-
    </li>
+
-
+
-
  </ul>
+
-
</li>
+
-
<li class="dir">Biobricks
+
  <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28overalldescription%29" class="dir">Biology</a>
-
      <ul>
+
  <ul>
-
  <li><a href="./">Submitted parts</a></li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28overalldescription%29">Overall Description and Design</a></li>
-
  <li><a href="./">Characterization</a></li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28tntsensing%29">TNT-Sensing Pathway</a></li>
-
  </ul>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28nitritenitratesensing%29">Nitrite/Nitrate-Sensing Pathway</a></li>
-
</li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28biobricks%29">Biobrick Parts</a></li>
-
             
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28results%29">Results</a></li>
-
<li><a href="./">Failed ideas</a></li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28solvedproblems%29">Problem Solving and Tips</a></li>
-
<li><a href="./">Results</a></li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28materialsandmethods%29">Materials and Methods</a></li>
-
<li><a href="./">Conclusions</a></li>
+
     <li><a href="https://2009.igem.org/Team:Edinburgh/biology%28references%29">References</a></li>
-
<li><a href="./">References</a></li>
+
  </ul>
-
     </ul>
+
  </li>
-
</li>
+
-
    <li class="dir">Modelling</li>
+
  <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28overalldescription%29" class="dir">Modelling</a>
-
     <li><a href="https://2009.igem.org/Team:Edinburgh/Notebook">Notebook</a></li>
+
  <ul>
-
     <li class="dir">Real world application</li>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28overalldescription%29">Overall Description</a></li>
-
+
     <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28generegulatorynetwork%29">Gene Regulatory Network</a></li>
 +
     <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28reallifemodelling%29">Real Life Modelling</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/reallifeapplication%28scaleup%29">Scale Up</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28results%29">Results</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/modelling%28references%29">References</a></li>
   </ul>
   </ul>
   </li>
   </li>
-
+
 
-
   <li><a href="./">Project related</a></li>
+
   <li><a href="https://2009.igem.org/Team:Edinburgh/ethics%28publicperception%29" class="dir">Underlying Philosophy</a>
-
       
+
    <ul>
-
   <li><a href="./" class="dir">Team</a>
+
    <li><a href="https://2009.igem.org/Team:Edinburgh/ethics%28publicperception%29">Public Perception</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/ethics%28legislationissues%29">Legislation issues</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/ethics%28biosafety%29">Biosafety</a></li>
 +
    <li><a href="https://2009.igem.org/Team:Edinburgh/ethics%28summary%29">DEMOCS Card Game</a></li>
 +
    </ul>
 +
  </li>
 +
 
 +
   <li><a href="https://2009.igem.org/Team:Edinburgh/newinformatics%28introduction%29" class="dir">Informatics</a>
 +
    <ul>
 +
      <li><a href="https://2009.igem.org/Team:Edinburgh/newinformatics%28introduction%29">Introduction</a></li>
 +
      <li><a href="https://2009.igem.org/Team:Edinburgh/newinformatics%28globetutorial%29">Globe Tutorial</a></li>
 +
      <li><a href="https://2009.igem.org/Team:Edinburgh/newinformatics%28igemwikhacks%29">iGEM WIKI Hacks</a></li>
 +
      <li><a href="https://2009.igem.org/Team:Edinburgh/newinformatics%28conclusions%29">Blog Entry</a></li>
 +
    </ul>
 +
  </li>
 +
 
 +
  <li><a href="https://2009.igem.org/Team:Edinburgh/Notebook">Notebook</a></li>
 +
 
 +
  <li><a href="https://2009.igem.org/Team:Edinburgh/team%28teammembers%29" class="dir">Team</a>
   <ul>
   <ul>
-
<li class="empty">Introduction</li>
+
<li><a href="https://2009.igem.org/Team:Edinburgh/team%28teammembers%29">Team Members</a></li>
-
<li><a href="./">Team introduction</a></li>
+
<li><a href="https://2009.igem.org/Team:Edinburgh/team%28advisors%29">Advisors</a></li>
-
<li><a href="./">Edinburgh University</a></li>
+
<li><a href="https://2009.igem.org/Team:Edinburgh/team%28supervisors%29">Supervisors</a></li>
-
<li><a href="./">Team members</a></li>
+
        <li><a href="https://2009.igem.org/Team:Edinburgh/team%28gallery%29">Gallery</a></li>
-
<li><a href="./">Advisors</a></li>
+
        <li><a href="https://2009.igem.org/Team:Edinburgh/team%28contacts%29">Contacts</a></li>
-
<li><a href="./">Supervisors</a></li>
+
        <li><a href="https://2009.igem.org/Team:Edinburgh/team%28acknowledgements%29">Acknowledgements</a></li>
   </ul>
   </ul>
   </li>
   </li>
-
       
 
-
  <li><a href="./">Gallery</a></li>
 
-
  <li><a href="./">Sponsors</a></li>
 
-
  <li><a href="./">Acknowledgements</a></li>
 
-
  <li><a href="./">Contacts</a></li>
 
</ul>
</ul>
         </div>
         </div>
-
<font color="#323131" style="font-size:14px;float:left;margin-left:20px;margin-top:20px;"><b>Overall description</b></font>
+
<font color="#323131" style="font-size:14px;float:left;margin-left:20px;margin-top:20px;"><b>Biology - References</b></font>
<div id=Edinburghcontent>
<div id=Edinburghcontent>
<img src="https://static.igem.org/mediawiki/2009/6/68/EdinburghPagemarker.jpg" style="margin-left:766px;">
<img src="https://static.igem.org/mediawiki/2009/6/68/EdinburghPagemarker.jpg" style="margin-left:766px;">
-
 
-
<div id="abstarct" style="background-color:#e4f5ca;border:1px solid #595151;width:755px;height:220px;margin-top:10px;margin-left:20px;font-size:11px;text-align:justify;padding-left:5px;padding-right:5px;padding-top:5px;padding-bottom:5px;">
 
-
<b> Abstract </b> <br /><br />
 
-
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent nec nisi nec elit volutpat sollicitudin. Sed cursus venenatis egestas. In mollis vehicula dictum. Sed id lacus vitae tortor commodo pharetra porttitor ut purus. Nullam euismod urna at felis accumsan sit amet viverra leo fermentum. Phasellus ac molestie sapien. In in neque purus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo. Nam nunc nisl, euismod eu dignissim nec, eleifend ut augue. Phasellus tempor condimentum ipsum, ut molestie lorem suscipit vel. Nulla luctus turpis eget neque facilisis eget sodales ante tincidunt. Praesent congue lobortis mollis. Maecenas non augue id mi dignissim luctus. Donec quis volutpat lectus. Mauris condimentum sodales luctus.
 
-
 
-
Nulla nec mauris sapien, eget gravida quam. Fusce vulputate risus eget diam elementum vel mattis nisi sagittis. Vivamus eget enim a nisl imperdiet aliquet commodo eget turpis. Aliquam nec mi ac neque tincidunt facilisis fringilla at sapien. Praesent in justo vel turpis hendrerit suscipit. Nullam nec magna leo, sed vulputate quam. Aliquam sollicitudin hendrerit erat at eleifend. Vivamus tincidunt felis vitae metus suscipit non volutpat neque tempus. Phasellus sagittis accumsan tellus, vitae pharetra ligula rhoncus vitae.
 
-
</div>
 
-
 
-
<img src="https://static.igem.org/mediawiki/2009/3/3b/EdinburghParagraphMarker.jpg" style="margin-left:-5px;margin-top:20px;">
 
<div id="text" style="margin-left:20px;margin-top:10px;padding-bottom:15px;">
<div id="text" style="margin-left:20px;margin-top:10px;padding-bottom:15px;">
-
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent nec nisi nec elit volutpat sollicitudin. Sed cursus venenatis egestas. In mollis vehicula dictum. Sed id lacus vitae tortor commodo pharetra porttitor ut purus. Nullam euismod urna at felis accumsan sit amet viverra leo fermentum. Phasellus ac molestie sapien. In in neque purus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo. Nam nunc nisl, euismod eu dignissim nec, eleifend ut augue. Phasellus tempor condimentum ipsum, ut molestie lorem suscipit vel. Nulla luctus turpis eget neque facilisis eget sodales ante tincidunt. Praesent congue lobortis mollis. Maecenas non augue id mi dignissim luctus. Donec quis volutpat lectus. Mauris condimentum sodales luctus.
 
-
 
-
Nulla nec mauris sapien, eget gravida quam. Fusce vulputate risus eget diam elementum vel mattis nisi sagittis. Vivamus eget enim a nisl imperdiet aliquet commodo eget turpis. Aliquam nec mi ac neque tincidunt facilisis fringilla at sapien. Praesent in justo vel turpis hendrerit suscipit. Nullam nec magna leo, sed vulputate quam. Aliquam sollicitudin hendrerit erat at eleifend. Vivamus tincidunt felis vitae metus suscipit non volutpat neque tempus. Phasellus sagittis accumsan tellus, vitae pharetra ligula rhoncus vitae.
 
 +
<b>Batchelor</b>, E., and Goulian, M. Imaging OmpR localization in <i>Escherichia coli</i>. <i> Molecular Microbiology </i> 59(6),1767-78 (2006).
<br /><br />
<br /><br />
-
 
+
<b>Baumgartner</b>, J. W., Kim, C., Brisette, R. E., Inoue, M., Park, C., and Hazelbauer, G. L. Transmembrane signalling by a hybrid protein: communication from the domain of chemoreceptor Trg that recognises sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ. <i>Journal of Bacteriology</i>, 1157-1163 (1994).
-
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent nec nisi nec elit volutpat sollicitudin. Sed cursus venenatis egestas. In mollis vehicula dictum. Sed id lacus vitae tortor commodo pharetra porttitor ut purus. Nullam euismod urna at felis accumsan sit amet viverra leo fermentum. Phasellus ac molestie sapien. In in neque purus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo. Nam nunc nisl, euismod eu dignissim nec, eleifend ut augue. Phasellus tempor condimentum ipsum, ut molestie lorem suscipit vel. Nulla luctus turpis eget neque facilisis eget sodales ante tincidunt. Praesent congue lobortis mollis. Maecenas non augue id mi dignissim luctus. Donec quis volutpat lectus. Mauris condimentum sodales luctus.
+
-
 
+
-
Nulla nec mauris sapien, eget gravida quam. Fusce vulputate risus eget diam elementum vel mattis nisi sagittis. Vivamus eget enim a nisl imperdiet aliquet commodo eget turpis. Aliquam nec mi ac neque tincidunt facilisis fringilla at sapien. Praesent in justo vel turpis hendrerit suscipit. Nullam nec magna leo, sed vulputate quam. Aliquam sollicitudin hendrerit erat at eleifend. Vivamus tincidunt felis vitae metus suscipit non volutpat neque tempus. Phasellus sagittis accumsan tellus, vitae pharetra ligula rhoncus vitae.
+
-
 
+
<br /><br />
<br /><br />
 +
<b>Beaumont</b>, H. J. E., Lens, S. I., Reijnders, W. N. M., Westerhoff, H. V., and Spanning, R. J. M. Expression of nitrite reductase in <i>Nitrosomonas europaea</i> involves NsrR, a novel nitrite-sensitive transcription repressor. <i>Molecular Microbiology</i> 54 (1), 148-158, 2004.
 +
<br /><br />
 +
<b>Binks</b>, P.R., French, C.E., Nicklin, S., & Bruce, N.C. Degradation of pentaerythritol tetranitrate by <i>Enterobacter cloacae</i> PB2. <i>Applied and Environmental Microbiology</i> 62(4), 1214-1219 (1996).
 +
<br /><br />
 +
<b>Colepicolo</b>, P., Cho, K. W., Poinar, G. O., and Hastings, J.W. Growth and luminescence of the <i>bacterium Xenorhabdus</i> luminescens from a human wound. <i>Appl Environ Microbiol</i>. 55(10), 2601–2606 (1989).
 +
<br /><br />
 +
<b>Daubner</b>, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. <i>Proceedings of the National Academy of Sciences of the United States of America</i> 84, 8912-8916 (1987).
 +
<br /><br />
 +
<b>Daubner</b>, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. <i>Proceedings of the National Academy of Sciences of the United States of America</i> 84, 8912-8916 (1987).
 +
<br /><br />
 +
<b>French</b>, C. E., Nicklin, S. &  Bruce, N. C. Aerobic degradation of 2,4,6-trinitrotoluene by <i>Enterobacter cloacae</i> pb2 and by pentaerythritol tetranitrate reductase. <i>Appl. Environ. Microbiol</i>.  64, 2864-2868 (1998).
 +
<br /><br />
 +
<b>Jenkins</b>, T., <i>et al</i>. Chemical signatures of tnt-filled land mines. <i>Talanta</i> 54, 501-513 (2001).
 +
<br /><br />
 +
<b>Lee</b>, C. Y., and Meighrn, E. A. Expression and DNA Sequence of the Gene Coding for the lux-Specific Fatty Acyl-CoA Reductase from <i>Photobacterium phosphoreum</i>. <i>The Journal of Microbiology</i>. 38(2), 80-87 (2000).
 +
<br /><br />
 +
<b>Lin</b>, H. Y., Bledsoe, P.J., and Stewart V. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen- responsive regulator Fnr in <i>Escherichia coli</i> K-12. <i>J Bacteriol</i>. 189(21),7539-48 (2007).
 +
<br /><br />
 +
<b>Looger</b>, L. L., Dwyer, M. A., Smith J. J., and Hellinga, H. W. Computational design of receptor and sensor proteins with novel functions. <i>Nature</i> 423, 185-190 (2003).
 +
<br /><br />
 +
<b>Maeda</b>, S., and Mizuno T. Evidence for multiple Omp-R binding sites in the upstream activation sequence of the ompC promoter in <i>Escherichia coli</i>: a single OmpR-binding site is capable of activating the promoter. <i>J. Bacteriol.</i> 172 (1), 501-503 (1990).
 +
<br /><br />
 +
<b>Mancini</b>, J. A., Boylan, M., Soly, R. R., Graham, A. F., and Meighen, E. A. Cloning and Expression of the <i>Photobacterium phosphoreum</i> Luminescence System Demonstrates a Unique lux Gene Organization. <i>The Journal of Biological Chemistry</i> 263 (28), 14308-14314 (1988).
 +
<br /><br />
 +
<b>Miyamoto</b>, C., Byers, D., Graham, A. F., and Meighen E. A. Expression of bioluminescence by <i>Escherichia coli</i> Containing Recombinant Vibrio harveyi DNA. <i>Journal of Bacteriology</i>. 169(1), 247-253 (1987).
 +
<br /><br />
 +
<b>Miyawaki</b>, A., Bringing bioluminescence into the picture. <i>Nature Methods</i> 4, 616 - 617 (2007).
 +
<br /><br />
 +
<b>O'Kane</b>, D. J., Woodward, B., Lee, J., and Prasher, D. C. Borrowed proteins in bacterial bioluminescence. <i>Proc Natl Acad Sci U S A</i>. 88(4), 1100–1104 (1991).
 +
<br /><br />
 +
<b>Spiro</b>, S. Regulators of bacterial responses to nitric oxide. <i>FEMS Microbiology Reviews</i> 31, 193-211, (2007).
-
<div id="left" style="width:50%">
 
-
Here lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent nec nisi nec elit volutpat sollicitudin. Sed cursus venenatis egestas. In mollis vehicula dictum. Sed id lacus vitae tortor commodo pharetra porttitor ut purus. Nullam euismod urna at felis accumsan sit amet viverra leo fermentum. Phasellus ac molestie sapien. In in neque purus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo. Nam nunc nisl, euismod eu dignissim nec, eleifend ut augue. Phasellus tempor condimentum ipsum, ut molestie lorem suscipit vel. Nulla luctus turpis eget neque facilisis eget sodales ante tincidunt. Praesent congue lobortis mollis. Maecenas non augue id mi dignissim luctus. Donec quis volutpat lectus. Mauris condimentum sodales luctus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo. Donec quis volutpat lectus. Mauris condimentum sodales luctus. Cras eget lorem arcu. Aliquam ornare tellus vel nisi commodo molestie. Aliquam aliquet magna nisl. Quisque velit nulla, adipiscing ut sagittis id, luctus viverra leo.
 
-
</div>
 
-
 
-
<div id="right" style="width:49%">
 
-
 
-
<img src="http://www.scharfphoto.com/fine_art_prints/archives/199812-026-Staph-Bacteria.jpg" style="margin-left:10px;"width="370" height="300">
 
</div>
</div>
-
</div>
 
-
 
-
<div id=bottomlinks align=right>
 
-
<div id=link><a href=#>next page</a></div>
 
-
<div id=link><a href=#>previous page</a></div>
 
-
</div>
 
</div>
</div>
<div id=bottombox>
<div id=bottombox>
<div id=bottomboxtext align=center>
<div id=bottomboxtext align=center>
-
<font size=2>Edinburgh University iGem Team 2009</font>
+
<font size=2>Edinburgh University iGEM Team 2009</font>
</div>
</div>
</div>
</div>

Latest revision as of 23:03, 21 October 2009

Our WIKI is best viewed with (click title):

* Internet Explorer 8
* Firefox 3
* Adobe Flash Player 10

If you encounter any visual problems please upgrade your browser to the latest version in order to get the most out of our WIKI. Thank you!
Biology - References
Batchelor, E., and Goulian, M. Imaging OmpR localization in Escherichia coli. Molecular Microbiology 59(6),1767-78 (2006).

Baumgartner, J. W., Kim, C., Brisette, R. E., Inoue, M., Park, C., and Hazelbauer, G. L. Transmembrane signalling by a hybrid protein: communication from the domain of chemoreceptor Trg that recognises sugar-binding proteins to the kinase/phosphatase domain of osmosensor EnvZ. Journal of Bacteriology, 1157-1163 (1994).

Beaumont, H. J. E., Lens, S. I., Reijnders, W. N. M., Westerhoff, H. V., and Spanning, R. J. M. Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor. Molecular Microbiology 54 (1), 148-158, 2004.

Binks, P.R., French, C.E., Nicklin, S., & Bruce, N.C. Degradation of pentaerythritol tetranitrate by Enterobacter cloacae PB2. Applied and Environmental Microbiology 62(4), 1214-1219 (1996).

Colepicolo, P., Cho, K. W., Poinar, G. O., and Hastings, J.W. Growth and luminescence of the bacterium Xenorhabdus luminescens from a human wound. Appl Environ Microbiol. 55(10), 2601–2606 (1989).

Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).

Daubner, S. C., Astorga, A. M., Leisman, G. B. & Baldwin, T. O. Yellow light emission of vibrio fischeri strain y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America 84, 8912-8916 (1987).

French, C. E., Nicklin, S. & Bruce, N. C. Aerobic degradation of 2,4,6-trinitrotoluene by Enterobacter cloacae pb2 and by pentaerythritol tetranitrate reductase. Appl. Environ. Microbiol. 64, 2864-2868 (1998).

Jenkins, T., et al. Chemical signatures of tnt-filled land mines. Talanta 54, 501-513 (2001).

Lee, C. Y., and Meighrn, E. A. Expression and DNA Sequence of the Gene Coding for the lux-Specific Fatty Acyl-CoA Reductase from Photobacterium phosphoreum. The Journal of Microbiology. 38(2), 80-87 (2000).

Lin, H. Y., Bledsoe, P.J., and Stewart V. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen- responsive regulator Fnr in Escherichia coli K-12. J Bacteriol. 189(21),7539-48 (2007).

Looger, L. L., Dwyer, M. A., Smith J. J., and Hellinga, H. W. Computational design of receptor and sensor proteins with novel functions. Nature 423, 185-190 (2003).

Maeda, S., and Mizuno T. Evidence for multiple Omp-R binding sites in the upstream activation sequence of the ompC promoter in Escherichia coli: a single OmpR-binding site is capable of activating the promoter. J. Bacteriol. 172 (1), 501-503 (1990).

Mancini, J. A., Boylan, M., Soly, R. R., Graham, A. F., and Meighen, E. A. Cloning and Expression of the Photobacterium phosphoreum Luminescence System Demonstrates a Unique lux Gene Organization. The Journal of Biological Chemistry 263 (28), 14308-14314 (1988).

Miyamoto, C., Byers, D., Graham, A. F., and Meighen E. A. Expression of bioluminescence by Escherichia coli Containing Recombinant Vibrio harveyi DNA. Journal of Bacteriology. 169(1), 247-253 (1987).

Miyawaki, A., Bringing bioluminescence into the picture. Nature Methods 4, 616 - 617 (2007).

O'Kane, D. J., Woodward, B., Lee, J., and Prasher, D. C. Borrowed proteins in bacterial bioluminescence. Proc Natl Acad Sci U S A. 88(4), 1100–1104 (1991).

Spiro, S. Regulators of bacterial responses to nitric oxide. FEMS Microbiology Reviews 31, 193-211, (2007).
Edinburgh University iGEM Team 2009

Retrieved from "http://2009.igem.org/Team:Edinburgh/biology(references)"