Team:Paris/Papers
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{{Template:Paris2009_menu}} | {{Template:Paris2009_menu}} | ||
- | == | + | ==Bibliography== |
+ | |||
+ | In order to class our reading, you can see here a part of it. Some sith the [X] symbol doe not figure in the wiki as support for the main parts. Every paper can be numeroted several time in different parts. Some reading does not figure here, but are link with all the information in its respective part. | ||
+ | |||
+ | |||
+ | For the references of the Ethical part go to the [https://2009.igem.org/Team:Paris/Ethics_Materials#top Material] or [https://2009.igem.org/Team:Paris/EthicalReportReferences#bottom References]. | ||
+ | |||
+ | |||
+ | <html> | ||
+ | </div> | ||
+ | <div id="paris_content_boxtop"> | ||
+ | </div> | ||
+ | <div id="paris_content"> | ||
+ | </html> | ||
+ | |||
+ | ==OMV Overview== | ||
{| | {| | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
- | |height=40px| [] | + | |height=40px| [X] |
|1999 | |1999 | ||
|Terry J. Beveridge | |Terry J. Beveridge | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2003 | |2003 | ||
|Miller SI & Guina T. | |Miller SI & Guina T. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2005 | |2005 | ||
|Kuehn MJ & Kesty NC. | |Kuehn MJ & Kesty NC. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2006 | |2006 | ||
|McBroom AJ & Kuehn MJ. | |McBroom AJ & Kuehn MJ. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2009 | |2009 | ||
|Purnick PE & Weiss R. | |Purnick PE & Weiss R. | ||
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</html> | </html> | ||
- | == | + | ==OMV Production== |
{| | {| | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[X] |
|2008 | |2008 | ||
|Mashburn-Warren L & Whiteley M. | |Mashburn-Warren L & Whiteley M. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[[Team:Paris/Addressing_overview4#top|[2]]] |
|2001 | |2001 | ||
|Arora A. & Tamm LK. | |Arora A. & Tamm LK. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2007 | |2007 | ||
|Brown EA & Hardwidge PR. | |Brown EA & Hardwidge PR. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2008 | |2008 | ||
|Burgess NK & Fleming KG. | |Burgess NK & Fleming KG. | ||
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! colspan="5" style="background: #ccccff;" | Tol/Pal | ! colspan="5" style="background: #ccccff;" | Tol/Pal | ||
|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[X] |
|1986 | |1986 | ||
|Robert CHEN & Ulf HENNING. | |Robert CHEN & Ulf HENNING. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|1999 | |1999 | ||
|Derouiche & Loret | |Derouiche & Loret | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[X] |
|2002 | |2002 | ||
|Dubuisson JF & Lazzaroni JC. | |Dubuisson JF & Lazzaroni JC. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2003 | |2003 | ||
|Llamas M & ARamos JL. | |Llamas M & ARamos JL. | ||
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</html> | </html> | ||
- | == | + | ==OMV Adressing== |
{| | {| | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[X] |
|1997 | |1997 | ||
|Kadurugamuwa JL & Beveridge TJ. | |Kadurugamuwa JL & Beveridge TJ. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|1998 | |1998 | ||
|Santini CL & Wu LF. | |Santini CL & Wu LF. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2000 | |2000 | ||
|Berks BC & Palmer T. | |Berks BC & Palmer T. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2001 | |2001 | ||
|Mishima Y & Murata K. | |Mishima Y & Murata K. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2001 | |2001 | ||
|Sargent F & Berks BC. | |Sargent F & Berks BC. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2001 | |2001 | ||
|Yahr TL & Wickner WT. | |Yahr TL & Wickner WT. | ||
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|2004 | |2004 | ||
|Robinson C & Bolhuis A. | |Robinson C & Bolhuis A. | ||
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|2006 | |2006 | ||
|Sargent F & Palmer T. | |Sargent F & Palmer T. | ||
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|2006 | |2006 | ||
|Lee PA & Georgiou G. | |Lee PA & Georgiou G. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2007 | |2007 | ||
|Maillard J & Sargent F. | |Maillard J & Sargent F. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2007 | |2007 | ||
|Sargent F. | |Sargent F. | ||
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|2008 | |2008 | ||
|Ferrandez Y & Condemine G. | |Ferrandez Y & Condemine G. | ||
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|2008 | |2008 | ||
|Thie H & Hust M. | |Thie H & Hust M. | ||
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|2009 | |2009 | ||
|Pradel N & Bonnet R | |Pradel N & Bonnet R | ||
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|2009 | |2009 | ||
|de Marco A. | |de Marco A. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[[Team:Paris/Addressing_overview4#top|[1]]] |
|2002 | |2002 | ||
|Wang Y. | |Wang Y. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2008 | |2008 | ||
|Dramsi S & Arthur M. | |Dramsi S & Arthur M. | ||
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</html> | </html> | ||
- | == | + | ==OMV Reception== |
{| | {| | ||
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|1989 | |1989 | ||
|Smeal T & Karin M. | |Smeal T & Karin M. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|1994 | |1994 | ||
|Heffernan EJ & Guiney DG. | |Heffernan EJ & Guiney DG. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2003 | |2003 | ||
|Veiga E & Fernández LA. | |Veiga E & Fernández LA. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|1982 | |1982 | ||
|JEF D. BOEKE & PETER MODEL | |JEF D. BOEKE & PETER MODEL | ||
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</html> | </html> | ||
- | == | + | ==OMV Signal transduction== |
{| | {| | ||
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|1984 | |1984 | ||
|Lopilato JE & Beckwith JR. | |Lopilato JE & Beckwith JR. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|1995 | |1995 | ||
|Härle C & Braun V. | |Härle C & Braun V. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[[Team:Paris/Transduction_overview2_transduction#top|[1]]] |
|1998 | |1998 | ||
|Tomii K & Kanehisa M. | |Tomii K & Kanehisa M. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|1999 | |1999 | ||
|De Wulf P & Lin EC. | |De Wulf P & Lin EC. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[[Team:Paris/Transduction_overview2_transduction#top|[6]]] |
|2000 | |2000 | ||
|Stock AM & Goudreau PN. | |Stock AM & Goudreau PN. | ||
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|2000 | |2000 | ||
|Yaron S & Matthews KR. | |Yaron S & Matthews KR. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2004 | |2004 | ||
|Dwyer MA & Hellinga HW. | |Dwyer MA & Hellinga HW. | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2006 | |2006 | ||
|Braun V & Sauter A. | |Braun V & Sauter A. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2007 | |2007 | ||
|Baker MD & Stock JB | |Baker MD & Stock JB | ||
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|2007 | |2007 | ||
|Baker MD & Stock JB. | |Baker MD & Stock JB. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
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|2007 | |2007 | ||
|Ibrahim M & Monnet V. | |Ibrahim M & Monnet V. | ||
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|2008 | |2008 | ||
|Thie H & Hust M. | |Thie H & Hust M. | ||
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|- style="background: #bebebe; text-align: center;" | |- style="background: #bebebe; text-align: center;" | ||
- | |height=40px|[] | + | |height=40px|[[Team:Paris/Transduction_overview2_transduction#top|[9]]] |
|2009 | |2009 | ||
|Kyriakidis DA & Tiligada E. | |Kyriakidis DA & Tiligada E. | ||
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|2009 | |2009 | ||
|Tomii & Kanehisa | |Tomii & Kanehisa | ||
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</html> | </html> | ||
- | == | + | ==Modelling== |
{| | {| | ||
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|2002 | |2002 | ||
|M.B.Ellowitz & P.S.Swain | |M.B.Ellowitz & P.S.Swain | ||
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|- style="background: #d8d8d8; text-align: center;" | |- style="background: #d8d8d8; text-align: center;" | ||
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|2006 | |2006 | ||
|J.Stricker & J.Hasty | |J.Stricker & J.Hasty |
Latest revision as of 03:34, 22 October 2009
Contents |
Bibliography
In order to class our reading, you can see here a part of it. Some sith the [X] symbol doe not figure in the wiki as support for the main parts. Every paper can be numeroted several time in different parts. Some reading does not figure here, but are link with all the information in its respective part.
For the references of the Ethical part go to the Material or References.
OMV Overview
N° | Date | Authors | Article | Pubmed |
[X] | 1999 | Terry J. Beveridge | Structures of gram-negative cell walls and their derived membrane vesicles. | 10438737 |
[X] | 2003 | Miller SI & Guina T. | Bacterial vesicle formation as a mechanism of protein transfer to animals. | 14531993 |
[X] | 2005 | Kuehn MJ & Kesty NC. | Bacterial outer membrane vesicles and the host-pathogen interaction. | 16291643 |
[X] | 2006 | McBroom AJ & Kuehn MJ. | Outer membrane vesicle production by Escherichia coli is independent of membrane instability. | 16855227 |
[1] | 2007 | McBroom AJ & Kuehn MJ. | Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. | 17163978 |
[2] | 2009 | Deatherage BL & Cookson BT. | Biogenesis of bacterial membrane vesicles | 19432795 |
[X] | 2009 | Purnick PE & Weiss R. | The second wave of synthetic biology: from modules to systems. | 19461664 |
OMV Production
N° | Date | Authors | Article | Pubmed |
[X] | 2008 | Mashburn-Warren L & Whiteley M. | Interaction of quorum signals with outer membrane lipids: insights into prokaryotic membrane vesicle formation. | 18630345 |
OmpA | ||||
---|---|---|---|---|
[2] | 2001 | Arora A. & Tamm LK. | Structure of outer membrane protein A transmembrane domain by NMR spectroscopy. | 11276254 |
[X] | 2007 | Brown EA & Hardwidge PR. | Biochemical characterization of the enterotoxigenic Escherichia coli LeoA protein. | 17975086 |
[X] | 2008 | Burgess NK & Fleming KG. | Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro. | 18641391 |
Tol/Pal | ||||
[X] | 1986 | Robert CHEN & Ulf HENNING. | Nucleotide sequence of the gene for the peptidoglycan-associated lipoprotein of Escherichia coli K12 | 210680 |
[3] | 1995 | Lazzaroni & Geli - | Transmembrane alpha-helix interactions are required for the functional assembly of the Escherichia coli Tol complex. | 179564 |
[X] | 1999 | Derouiche & Loret | Circular dichroism and molecular modeling of the E. coli TolA periplasmic domains. | 10380085 |
[4] | 2001 | Lloubès & RJournet L. | The Tol-Pal proteins of the Escherichia coli cell envelope: an energized system required for outer membrane integrity? | 11501670 |
[X] | 2002 | Dubuisson JF & Lazzaroni JC. | Mutational analysis of the TolA C-terminal domain of Escherichia coli and genetic evidence for an interaction between TolA and TolB. | 12142433 |
[X] | 2003 | Llamas M & ARamos JL. | Role of Pseudomonas putida tol-oprL gene products in uptake of solutes through the cytoplasmic membrane. | 12896989 |
[5] | 2004 | Henry T & Lloubès R. | Improved methods for producing outer membrane vesicles in Gram-negative bacteria. | 15249060 |
OMV Adressing
N° | Date | Authors | Article | Pubmed |
[X] | 1997 | Kadurugamuwa JL & Beveridge TJ. | Natural release of virulence factors in membrane vesicles by Pseudomonas aeruginosa and the effect of aminoglycoside antibiotics on their release. | 9421308 |
[X] | 1998 | Santini CL & Wu LF. | A novel sec-independent periplasmic protein translocation pathway in Escherichia coli. | 9427745 |
[X] | 2000 | Berks BC & Palmer T. | The Tat protein export pathway. | 10652088 |
[X] | 2001 | Mishima Y & Murata K. | Super-channel in bacteria: function and structure of the macromolecule import system mediated by a pit-dependent ABC transporter. | 11731126 |
[X] | 2001 | Sargent F & Berks BC. | Purified components of the Escherichia coli Tat protein transport system form a double-layered ring structure. | 11422364 |
[X] | 2001 | Yahr TL & Wickner WT. | Functional reconstitution of bacterial Tat translocation in vitro. | 11350936 |
[X] | 2004 | Robinson C & Bolhuis A. | Tat-dependent protein targeting in prokaryotes and chloroplasts. | 15546663 |
[X] | 2006 | Sargent F & Palmer T. | Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. | 16445746 |
[X] | 2006 | Lee PA & Georgiou G. | The bacterial twin-arginine translocation pathway. | 16756481 |
[X] | 2007 | Maillard J & Sargent F. | Structural diversity in twin-arginine signal peptide-binding proteins. | 17901208 |
[X] | 2007 | Sargent F. | The twin-arginine transport system: moving folded proteins across membranes. | 17956229 |
[X] | 2008 | Ferrandez Y & Condemine G. | Novel mechanism of outer membrane targeting of proteins in Gram-negative bacteria. | 18643934 |
[X] | 2008 | Thie H & Hust M. | SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. | 18504019 |
[X] | 2009 | Pradel N & Bonnet R | Sec- and Tat-dependent translocation of beta-lactamases across the Escherichia coli inner membrane. | 18643934 |
[X] | 2009 | de Marco A. | Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coli. | 19442264 |
ClyA | ||||
---|---|---|---|---|
[5] [1] | 2008 | Kim JY & DeLisa MP. | Engineered bacterial outer membrane vesicles with enhanced functionality. | 18511069 |
[1] [2] | 2009 | Mueller M & Ban N. | The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism. | 19421192 |
OmpA | ||||
[1] | 2002 | Wang Y. | The function of OmpA in Escherichia coli. | 11906175 |
[X] | 2008 | Dramsi S & Arthur M. | Covalent attachment of proteins to peptidoglycan. | 18266854 |
OMV Reception
N° | Date | Authors | Article | Pubmed |
Adhesin | ||||
---|---|---|---|---|
[X] | 1989 | Smeal T & Karin M. | Different requirements for formation of Jun:Jun and Jun:Fos complexes. | 2516828 |
[X] | 1994 | Heffernan EJ & Guiney DG. | Specificity of the complement resistance and cell association phenotypes encoded by the outer membrane protein genes rck from Salmonella typhimurium and ail from Yersinia enterocolitica. | 7927803 |
[X] | 2003 | Veiga E & Fernández LA. | Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. | 12949111 |
[6] | 2004 | Kesty NC & Kuehn MJ. | Incorporation of heterologous outer membrane and periplasmic proteins into Escherichia coli outer membrane vesicles. | 14578354 |
G3P | ||||
[X] | 1982 | JEF D. BOEKE & PETER MODEL | A prokaryotic membrane anchor sequence: carboxyl terminus of bacteriophage f1 gene III protein retains it in the membrane. | 6291030 |
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OMV Signal transduction
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Vesicle biophysics model | ||||
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