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Team:Paris/Papers
From 2009.igem.org
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|Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. | |Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. | ||
|[http://www.ncbi.nlm.nih.gov/pubmed/19198978 19198978] | |[http://www.ncbi.nlm.nih.gov/pubmed/19198978 19198978] | ||
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| + | |2009 | ||
| + | |Tomii & Kanehisa | ||
| + | |comparative analysis of ABC transporter | ||
| + | |[http://genome.cshlp.org/content/8/10/1048.full.html#ref-list-1 link] | ||
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Revision as of 15:55, 3 September 2009
Contents |
OMV Overview
| N° | Date | Authors | Article | Pubmed |
| [] | 1999 | Terry J. Beveridge | Structures of gram-negative cell walls and their derived membrane vesicles. | 10438737 |
| [] | 2003 | Miller SI & Guina T. | Bacterial vesicle formation as a mechanism of protein transfer to animals. | 14531993 |
| [] | 2005 | Kuehn MJ & Kesty NC. | Bacterial outer membrane vesicles and the host-pathogen interaction. | 16291643 |
| [] | 2006 | McBroom AJ & Kuehn MJ. | Outer membrane vesicle production by Escherichia coli is independent of membrane instability. | 16855227 |
| [] | 2007 | McBroom AJ & Kuehn MJ. | Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. | 17163978 |
| [] | 2009 | Deatherage BL & Cookson BT. | Biogenesis of bacterial membrane vesicles | 19432795 |
| [] | 2009 | Purnick PE & Weiss R. | The second wave of synthetic biology: from modules to systems. | 19461664 |
OMV Production
| N° | Date | Authors | Article | Pubmed |
| [] | 2008 | Mashburn-Warren L & Whiteley M. | Interaction of quorum signals with outer membrane lipids: insights into prokaryotic membrane vesicle formation. | 18630345 |
| OmpA | ||||
|---|---|---|---|---|
| [] | 2001 | Arora A. & Tamm LK. | Structure of outer membrane protein A transmembrane domain by NMR spectroscopy. | 11276254 |
| [] | 2007 | Brown EA & Hardwidge PR. | Biochemical characterization of the enterotoxigenic Escherichia coli LeoA protein. | 17975086 |
| [] | 2008 | Burgess NK & Fleming KG. | Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro. | 18641391 |
| Tol/Pal | ||||
| [] | 1986 | Robert CHEN & Ulf HENNING. | Nucleotide sequence of the gene for the peptidoglycan-associated lipoprotein of Escherichia coli K12 | 210680 |
| [1] | 1995 | Lazzaroni & Geli - | Transmembrane alpha-helix interactions are required for the functional assembly of the Escherichia coli Tol complex. | 179564 |
| [] | 1999 | Derouiche & Loret | Circular dichroism and molecular modeling of the E. coli TolA periplasmic domains. | 10380085 |
| [2] | 2001 | Lloubès & RJournet L. | The Tol-Pal proteins of the Escherichia coli cell envelope: an energized system required for outer membrane integrity? | 11501670 |
| [] | 2002 | Dubuisson JF & Lazzaroni JC. | Mutational analysis of the TolA C-terminal domain of Escherichia coli and genetic evidence for an interaction between TolA and TolB. | 12142433 |
| [] | 2003 | Llamas M & ARamos JL. | Role of Pseudomonas putida tol-oprL gene products in uptake of solutes through the cytoplasmic membrane. | 12896989 |
| [3] | 2004 | Henry T & Lloubès R. | Improved methods for producing outer membrane vesicles in Gram-negative bacteria. | 15249060 |
OMV Adressing
| N° | Date | Authors | Article | Pubmed |
| [] | 1997 | Kadurugamuwa JL & Beveridge TJ. | Natural release of virulence factors in membrane vesicles by Pseudomonas aeruginosa and the effect of aminoglycoside antibiotics on their release. | 9421308 |
| [] | 1998 | Santini CL & Wu LF. | A novel sec-independent periplasmic protein translocation pathway in Escherichia coli. | 9427745 |
| [] | 2000 | Berks BC & Palmer T. | The Tat protein export pathway. | 10652088 |
| [] | 2001 | Mishima Y & Murata K. | Super-channel in bacteria: function and structure of the macromolecule import system mediated by a pit-dependent ABC transporter. | 11731126 |
| [] | 2001 | Sargent F & Berks BC. | Purified components of the Escherichia coli Tat protein transport system form a double-layered ring structure. | 11422364 |
| [] | 2001 | Yahr TL & Wickner WT. | Functional reconstitution of bacterial Tat translocation in vitro. | 11350936 |
| [] | 2004 | Robinson C & Bolhuis A. | Tat-dependent protein targeting in prokaryotes and chloroplasts. | 15546663 |
| [] | 2006 | Sargent F & Palmer T. | Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. | 16445746 |
| [] | 2006 | Lee PA & Georgiou G. | The bacterial twin-arginine translocation pathway. | 16756481 |
| [] | 2007 | Maillard J & Sargent F. | Structural diversity in twin-arginine signal peptide-binding proteins. | 17901208 |
| [] | 2007 | Sargent F. | The twin-arginine transport system: moving folded proteins across membranes. | 17956229 |
| [] | 2008 | Ferrandez Y & Condemine G. | Novel mechanism of outer membrane targeting of proteins in Gram-negative bacteria. | 18643934 |
| [] | 2008 | Thie H & Hust M. | SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. | 18504019 |
| [] | 2009 | Pradel N & Bonnet R | Sec- and Tat-dependent translocation of beta-lactamases across the Escherichia coli inner membrane. | 18643934 |
| [] | 2009 | de Marco A. | Strategies for successful recombinant expression of disulfide bond-dependent proteins in Escherichia coli. | 19442264 |
| ClyA | ||||
|---|---|---|---|---|
| [] | 2008 | Kim JY & DeLisa MP. | Engineered bacterial outer membrane vesicles with enhanced functionality. | 18511069 |
| [] | 2009 | Mueller M & Ban N. | The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism. | 19421192 |
| OmpA | ||||
| [] | 2002 | Wang Y. | The function of OmpA in Escherichia coli. | 11906175 |
| [] | 2008 | Dramsi S & Arthur M. | Covalent attachment of proteins to peptidoglycan. | 18266854 |
OMV Reception
| N° | Date | Authors | Article | Pubmed |
| Adhesin | ||||
|---|---|---|---|---|
| [] | 1989 | Smeal T & Karin M. | Different requirements for formation of Jun:Jun and Jun:Fos complexes. | 2516828 |
| [] | 1994 | Heffernan EJ & Guiney DG. | Specificity of the complement resistance and cell association phenotypes encoded by the outer membrane protein genes rck from Salmonella typhimurium and ail from Yersinia enterocolitica. | 7927803 |
| [] | 2003 | Veiga E & Fernández LA. | Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. | 12949111 |
| [] | 2004 | Kesty NC & Kuehn MJ. | Incorporation of heterologous outer membrane and periplasmic proteins into Escherichia coli outer membrane vesicles. | 14578354 |
| G3P | ||||
| [] | 1982 | JEF D. BOEKE & PETER MODEL | A prokaryotic membrane anchor sequence: carboxyl terminus of bacteriophage f1 gene III protein retains it in the membrane. | 6291030 |
| [] | 1999 | Chatellier J & Riechmann L. | Interdomain interactions within the gene 3 protein of filamentous phage. | 10606756 |
| [] | 1999 | Lubkowski J & Wlodawer A. | Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. | 10404600 |
| [] | 2002 | Baek H & Cha S. | An improved helper phage system for efficient isolation of specific antibody molecules in phage display. | 11861923 |
| [] | 2003 | Karlsson F & Malmborg-Hager AC. | The mechanism of bacterial infection by filamentous phages involves molecular interactions between TolA and phage protein 3 domains. | 12670988 |
| Snare | ||||
| [] | 2000 | Waters MG & Hughson FM. | Membrane tethering and fusion in the secretory and endocytic pathways. | 11208146 |
| [] | 2000 | Woodbury DJ & Rognlien K. | The t-SNARE syntaxin is sufficient for spontaneous fusion of synaptic vesicles to planar membranes. | 11067766 |
| [] | 2002 | Bowen ME,Brunger AT. | Mutational analysis of synaptobrevin transmembrane domain oligomerization. | 12501216 |
| [] | 2003 | Hu C & Rothman JE. | Fusion of cells by flipped SNAREs. | 12805548 |
| [] | 2003 | Weninger K & Brunger AT. | Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations. | 14657376 |
| [] | 2006 | Giraudo CG & Rothman JE. | A clamping mechanism involved in SNARE-dependent exocytosis. | 16794037 |
| [] | 2006 | Low HH & Löwe J. | A bacterial dynamin-like protein. | 17122778 |
| [] | 2007 | Weninger K & Brunger AT. | Accessory proteins stabilize the acceptor complex for synaptobrevin, the 1:1 syntaxin/SNAP-25 complex. | 18275821 |
| [] | 2008 | Delevoye C & Subtil A. | SNARE protein mimicry by an intracellular bacterium. | 18369472 |
| [] | 2009 | Giraudo CG & Rothman JE. | Alternative zippering as an on-off switch for SNARE-mediated fusion. | 19164750 |
OMV Signal transduction
| N° | Date | Authors | Article | Pubmed |
| [] | 1984 | Lopilato JE & Beckwith JR. | D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport. | 6327616 |
| [] | 1995 | Härle C & Braun V. | Signal transfer through three compartments: transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface. | 7729419 |
| [] | 1998 | Tomii K & Kanehisa M. | A comparative analysis of ABC transporters in complete microbial genomes. | 9799792 |
| [] | 1999 | De Wulf P & Lin EC. | The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons. | 10542180 |
| [] | 2000 | Stock AM & Goudreau PN. | Two-component signal transduction. | 10966457 |
| [] | 2000 | Yaron S & Matthews KR. | Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. | 11010892 |
| [] | 2004 | Dwyer MA & Hellinga HW. | Periplasmic binding proteins: a versatile superfamily for protein engineering. | 15313245 |
| [] | 2006 | Braun V & Sauter A. | Gene regulation by transmembrane signaling. | 16718597 |
| [] | 2007 | Baker MD & Stock JB | Signal transduction: networks and integrated circuits in bacterial cognition. | 18054766 |
| [] | 2007 | Baker MD & Stock JB. | Systems biology of bacterial chemotaxis. | 16529985 |
| [] | 2007 | Ibrahim M & Monnet V. | Control of the transcription of a short gene encoding a cyclic peptide in Streptococcus thermophilus: a new quorum-sensing system? | 17921293 |
| [] | 2008 | Thie H & Hust M. | SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. | 18504019 |
| [] | 2009 | Kyriakidis DA & Tiligada E. | Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. | 19198978 |
| [] | 2009 | Tomii & Kanehisa | comparative analysis of ABC transporter | link |
Modelling
| N° | Date | Authors | Article | Pubmed |
| [] | 1977 | Gillespie Daniel T. | Exact Stochastic Simlation of Coupled Chemical Equations | Gillespie1 |
| [] | 1997 | J.B. Andersen & S.Molin | New Stable Variants of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria | 7729419 |
