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Team:Paris/Transduction overview
From 2009.igem.org
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This part of the project was focus on two points: | This part of the project was focus on two points: | ||
| - | fusion between the | + | *The fusion between the OMVs and the targeted bacteria. |
| - | + | *The activation of the transcription of a genetic construction after fusionning the OMVs with the outer membrane of the receiving bacterium. | |
| - | + | The sinequanone conditions : we tried to achieve this aim without sacrifying important proprieties of our message : specific, repeatable , multidirectional. | |
It seems that we have two possible ways : the ABC transporters or the two component systems . | It seems that we have two possible ways : the ABC transporters or the two component systems . | ||
| - | |||
| + | ABC transporters and two component systems are natural transport system (export or import) of nutriments or toxines. | ||
| + | There is another possibility but the mecanism is mostly unknown : the DNA-containing OMVs which could be a useful mean of information transport. | ||
| - | |||
<html> | <html> | ||
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====References==== | ====References==== | ||
<ol class="references"> | <ol class="references"> | ||
| - | <li> [[Team:Paris/Transduction_overview#1 | | + | <li> [[Team:Paris/Transduction_overview#1 | ^]] D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport. Lopilato JE & Beckwith JR. 1984 - [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=6327616 6327616]</li> |
| - | <li> [[Team:Paris/Transduction_overview#2 | | + | <li> [[Team:Paris/Transduction_overview#2 | ^]] Signal transfer through three compartments: transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface. Härle C & Braun V. 1995 - [http://www.ncbi.nlm.nih.gov/pubmed/7729419 7729419]</li> |
| - | <li> [[Team:Paris/Transduction_overview#3 | | + | <li> [[Team:Paris/Transduction_overview#3 | ^]] A comparative analysis of ABC transporters in complete microbial genomes. Tomii K & Kanehisa M. 1998- [http://www.ncbi.nlm.nih.gov/pubmed/9799792 9799792]</li> |
| - | <li> [[Team:Paris/Transduction_overview#4 | | + | <li> [[Team:Paris/Transduction_overview#4 | ^]] The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons.De Wulf P & Lin EC. 1999 - [http://www.ncbi.nlm.nih.gov/pubmed/10542180 10542180]</li> |
| - | <li> [[Team:Paris/Transduction_overview#5 | | + | <li> [[Team:Paris/Transduction_overview#5 | ^]] Two-component signal transduction. Stock AM & Goudreau PN. 2000- [http://www.ncbi.nlm.nih.gov/pubmed/10966457 10966457]</li> |
| - | <li> [[Team:Paris/Transduction_overview#6 | | + | <li> [[Team:Paris/Transduction_overview#6 | ^]] Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Yaron S & Matthews KR. 2000- [http://www.ncbi.nlm.nih.gov/pubmed/11010892 11010892]</li> |
| - | <li> [[Team:Paris/Transduction_overview#7 | | + | <li> [[Team:Paris/Transduction_overview#7 | ^]] Periplasmic binding proteins: a versatile superfamily for protein engineering. Dwyer MA & Hellinga HW. 2004- [http://www.ncbi.nlm.nih.gov/pubmed/11010892 11010892]</li> |
| - | <li> [[Team:Paris/Transduction_overview#8 | | + | <li> [[Team:Paris/Transduction_overview#8 | ^]] Gene regulation by transmembrane signaling. Braun V & Sauter A. 2006- [http://www.ncbi.nlm.nih.gov/pubmed/16718597 16718597]</li> |
| - | <li> [[Team:Paris/Transduction_overview#9 | | + | <li> [[Team:Paris/Transduction_overview#9 | ^]] Signal transduction: networks and integrated circuits in bacterial cognition. Baker MD & Stock JB 2007- [http://www.ncbi.nlm.nih.gov/pubmed/18054766 18054766]</li> |
| - | <li> [[Team:Paris/Transduction_overview#10 | | + | <li> [[Team:Paris/Transduction_overview#10 | ^]] Systems biology of bacterial chemotaxis. Baker MD & Stock JB. 2007- [http://www.ncbi.nlm.nih.gov/pubmed/16529985 16529985]</li> |
| - | <li> [[Team:Paris/Transduction_overview#11 | | + | <li> [[Team:Paris/Transduction_overview#11 | ^]] Control of the transcription of a short gene encoding a cyclic peptide in Streptococcus thermophilus: a new quorum-sensing system? Ibrahim M & Monnet V. 2007- [http://www.ncbi.nlm.nih.gov/pubmed/17921293 17921293]</li> |
| - | <li> [[Team:Paris/Transduction_overview#12 | | + | <li> [[Team:Paris/Transduction_overview#12 | ^]] SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. Thie H & Hust M. 2008- [http://www.ncbi.nlm.nih.gov/pubmed/18504019 18504019]</li> |
| - | <li> [[Team:Paris/Transduction_overview#13 | | + | <li> [[Team:Paris/Transduction_overview#13 | ^]] Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. Kyriakidis DA & Tiligada E. 2009- [http://www.ncbi.nlm.nih.gov/pubmed/19198978 19198978]</li> |
| - | <li> [[Team:Paris/Transduction_overview#14 | | + | <li> [[Team:Paris/Transduction_overview#14 | ^]] comparative analysis of ABC transporter. Tomii & Kanehisa 2009- [http://genome.cshlp.org/content/8/10/1048.full.html#ref-list-1 pdf-link]</li> |
</ol> | </ol> | ||
Revision as of 14:13, 4 September 2009
iGEM > Paris > Reception > Overview
Introduction
This part of the project was focus on two points:
- The fusion between the OMVs and the targeted bacteria.
- The activation of the transcription of a genetic construction after fusionning the OMVs with the outer membrane of the receiving bacterium.
The sinequanone conditions : we tried to achieve this aim without sacrifying important proprieties of our message : specific, repeatable , multidirectional.
It seems that we have two possible ways : the ABC transporters or the two component systems .
ABC transporters and two component systems are natural transport system (export or import) of nutriments or toxines. There is another possibility but the mecanism is mostly unknown : the DNA-containing OMVs which could be a useful mean of information transport.
References
- ^ D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport. Lopilato JE & Beckwith JR. 1984 - 6327616
- ^ Signal transfer through three compartments: transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface. Härle C & Braun V. 1995 - 7729419
- ^ A comparative analysis of ABC transporters in complete microbial genomes. Tomii K & Kanehisa M. 1998- 9799792
- ^ The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons.De Wulf P & Lin EC. 1999 - 10542180
- ^ Two-component signal transduction. Stock AM & Goudreau PN. 2000- 10966457
- ^ Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Yaron S & Matthews KR. 2000- 11010892
- ^ Periplasmic binding proteins: a versatile superfamily for protein engineering. Dwyer MA & Hellinga HW. 2004- 11010892
- ^ Gene regulation by transmembrane signaling. Braun V & Sauter A. 2006- 16718597
- ^ Signal transduction: networks and integrated circuits in bacterial cognition. Baker MD & Stock JB 2007- 18054766
- ^ Systems biology of bacterial chemotaxis. Baker MD & Stock JB. 2007- 16529985
- ^ Control of the transcription of a short gene encoding a cyclic peptide in Streptococcus thermophilus: a new quorum-sensing system? Ibrahim M & Monnet V. 2007- 17921293
- ^ SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. Thie H & Hust M. 2008- 18504019
- ^ Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. Kyriakidis DA & Tiligada E. 2009- 19198978
- ^ comparative analysis of ABC transporter. Tomii & Kanehisa 2009- pdf-link
