Latest revision as of 12:00, 20 August 2010

Meetings Calendar

Formal Lab Session - 24th July 2009

Team Newcastle 2009 iGEM 24-07-09 IMG 0133.JPG

Introduction

Preparing some LB solution

The previous lab session has seen the team make a start on the real lab work and also beginning to finish the work involved with the introductory lab sessions.

To begin the real lab work five BioBricks from the Spring Distribution were hydrated and stored in the freezer, namely BioBricks BBA_C0056 (cI in the lambda phage), BBa_B1002 (terminator sequence), BBa_C0077 (CinR activator), BBa_C0076 (autoinducer synthetase) and BBa_R0077 (promoter which is CinR and HSL regulated - RBS+)

The real lab work also involved the team inoculating 2 flasks of 100ml LB with E. coli containing pMUTIN4 and growing the cultures overnight in the 37ºC orbital incubator.

The introductory lab session work saw the team conduct the first few stages of the ethanol precipitation of the GFP and RFP midi-prep samples.

For work done for the introductory lab sessions, please click on this link. Meanwhile, as far as real lab work goes, the team needs to transform E. coli cells with the five BioBricks which were prepared yesterday from the Spring Distributions. The team also need to store away the cultures of E. coli cells which contain the pMUTIN4 plasmid.

Practical Outline

By the end of the day the iGEM team need to:

Tranform some E. coli cells (probably Promega JM109 E. coli cells) with the five BioBricks recently prepared from the Spring Distributions.
Prepare the E. coli cells, which contain the plasmid pMUTIN4, for long term storage.

Procedure

Transforming JM109 E.coli cells

In carrying out the transformation process, the team decided to use commercial JM109 E. coli cells purchased from Promega. Along with the cells, Promega enclosed their own protocol which we followed. There were a few changes that were made however:

Step 3 - instead of adding 100ul of Competent Cells to the culture tubes, only 50ul was transferred.
Step 4 - the DNA added to the competent cells was 5ul instead of 10ul.
Step 8 - the media used to grow the transformant cells was LB and not SOC.

We also took an alternative step when it came to step 8. The 'Notes' section of the Promega protocol gave us an option of rather spreading the transformant E. coli cells on plates (with antibiotics present), the cells are pelleted and resuspended in fresh 200ul of LB solution.

Plating out the transformant colonies

Mathew preparing some LB solution

Five agar plates containing LB + ampicillin were taken from the stock supply and used to plate out 100ul of the diluted transformant cells. This was done under aseptic conditions and involved using glass beads to distribute the culture over the plate surface. The plates were then placed in the 37ºC incubator overnight.

Storing E. coli cells which contain pMUTIN4

The two flasks of 100ml LB solution, inoculated with E. coli cells containing pMUTIN4 plasmid, were placed into 4 x 50ml Falcon tubes under aseptic conditions. These tubes were then placed in a centrifuged and spun for about 20 minutes.

After this spinning process was completed the supernatants were removed from the falcon tubes using a vacuum pump. The pellets were left within the tubes and placed within the -20ºC freezer for use another day.

July
M	T	W	T	F	S	S
		1	2	3	4	5
6	7	8	9	10	11	12
13	14	15	16	17	18	19
20	21	22	23	24	25	26
27	28	29	30	31

August
M	T	W	T	F	S	S
					1	2
3	4	5	6	7	8	9
10	11	12	13	14	15	16
17	18	19	20	21	22	23
24	25	26	27	28	29	30
31

September
M	T	W	T	F	S	S
	1	2	3	4	5	6
7	8	9	10	11	12	13
14	15	16	17	18	19	20
21	22	23	24	25	26	27
28	29	30

October
M	T	W	T	F	S	S
			1	2	3	4
5	6	7	8	9	10	11
12	13	14	15	16	17	18
19	20	21	22	23	24	25
26	27	28	29	30	31

20 – 21 June 2009 - Europe workshop (London)
23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
23 October Practice Presentation (Newcastle)
23 October T-shirts are ready
27 October Practice Presentation (Sunderland)
27 October Poster is ready
30 October – 2 November 2009 - Jamboree (Boston)

@@ Line 3: / Line 3: @@
 {{:Team:Newcastle/Left}}
 __NOTOC__
-=Lab session: 24th July=
+[[Image:Team Newcastle 2009 iGEM ProbationaryP-Sign.PNG|50px|right]]
+=Formal Lab Session - 24th July 2009=
+[[Image:Team Newcastle 2009 iGEM 24-07-09 IMG 0133.JPG|350px|center]]
 ==Introduction==
-As far as the introductory lab sessions go, we have completed one half of the ethanol precipitation procedure; once completed the procedure will see the plasmid ''pSB1A2'' (containing ''GFP'') and the plasmid ''pSB1AT3''(containing ''RFP'') free from ethanol. This means they can be loaded onto gel and analysed appropriately (i.e. DNA gel electrophoresis)
+[[Image:Team Newcastle 2009 iGEM 24-07-09 IMG 0132.JPG|200px|thumb|Preparing some LB solution ]]
+The previous lab session has seen the team make a start on the real lab work and also beginning to finish the work involved with the introductory lab sessions.
+To begin the real lab work five BioBricks from the Spring Distribution were hydrated and stored in the freezer, namely BioBricks ''BBA_C0056'' (cI in the lambda phage), ''BBa_B1002'' (terminator sequence), ''BBa_C0077'' (CinR activator), ''BBa_C0076'' (autoinducer synthetase) and ''BBa_R0077'' (promoter which is CinR and HSL regulated - RBS+)
+The real lab work also involved the team inoculating 2 flasks of 100ml LB with ''E. coli'' containing ''pMUTIN4'' and growing the cultures overnight in the 37ºC orbital incubator.
+The introductory lab session work saw the team conduct the first few stages of the ethanol precipitation of the ''GFP'' and ''RFP'' midi-prep samples.
+For work done for the introductory lab sessions, [https://2009.igem.org/Team:Newcastle/IntroductoryLabwork/24_July_2009 please click on this link]. Meanwhile, as far as real lab work goes, the team needs to transform ''E. coli'' cells with the five BioBricks which were prepared yesterday from the Spring Distributions. The team also need to store away the cultures of ''E. coli'' cells which contain the ''pMUTIN4'' plasmid.
 ==Practical Outline==
-Remove the Eppendorf tubes from fridge and resume the rest of the ethanol precipitation protocol.
+By the end of the day the iGEM team need to:
+# Tranform some ''E. coli'' cells (probably Promega ''JM109'' ''E. coli'' cells) with the five BioBricks recently prepared from the Spring Distributions.
+# Prepare the ''E. coli'' cells, which contain the plasmid ''pMUTIN4'', for long term storage.
+<br>
+==Procedure==
+===Transforming ''JM109'' ''E.coli'' cells===
+In carrying out the transformation process, the team decided to use commercial ''JM109'' ''E. coli'' cells purchased from Promega. Along with the cells, [http://www.promega.com/tbs/tb095/tb095.html Promega enclosed their own protocol] which we followed. There were a few changes that were made however:
+<br>
+* Step 3 - instead of adding 100ul of Competent Cells to the culture tubes, only 50ul was transferred.
+* Step 4 - the DNA added to the competent cells was 5ul instead of 10ul.
+* Step 8 - the media used to grow the transformant cells was LB and not SOC.
+<br>
+We also took an alternative step when it came to step 8. The 'Notes' section of the Promega protocol gave us an option of rather spreading the transformant ''E. coli'' cells on plates (with antibiotics present), the cells are pelleted and resuspended in fresh 200ul of LB solution.
-==Ethanol Precipitation continued==
+===Plating out the transformant colonies===
-So far we have added sodium acetate to the 2 DNA samples and also added ethanol. The team have also divided the samples into Eppendorf tubes and stored them in the fridge overnight (a replacement for the15 minute incubation-on-ice step). The following was carried out:
+[[Image:Team Newcastle 2009 iGEM 24-07-09 IMG 0138.JPG|200px|thumb|Mathew preparing some LB solution]]
+Five agar plates containing LB + ampicillin were taken from the stock supply and used to plate out 100ul of the diluted transformant cells. This was done under aseptic conditions and involved using glass beads to distribute the culture over the plate surface. The plates were then placed in the 37ºC incubator overnight.
-* The 16 Eppendorf tubes (8 containing GFP and 8 containing RFP) were spun down for 20 minutes at 13,000 rpm.
+===Storing ''E. coli'' cells which contain ''pMUTIN4''===
+The two flasks of 100ml LB solution, inoculated with ''E. coli'' cells containing ''pMUTIN4'' plasmid, were placed into 4 x 50ml Falcon tubes under aseptic conditions. These tubes were then placed in a centrifuged and spun for about 20 minutes.
-* With the supernatant removed the 16 samples were rinsed in 70% ethanol and spun for 15 minutes. The supernatant was discarded (making sure that the DNA pellet was it disturbed) and the tube dried using the Speed Vac machine.
+After this spinning process was completed the supernatants were removed from the falcon tubes using a vacuum pump. The pellets were left within the tubes and placed within the -20ºC freezer for use another day.
-* The DNA pellets were then resuspended in 50ul of distilled water and stored away in the -80ºC freezer.
+{{:Team:Newcastle/Project/Labwork/CalTemplate}}
-==Conclusion==
-Both the ''pSB1A2'' plasmid containing ''GFP'' and the ''pSB1AT3'' plasmid containing ''RFP'' will be analysed by DNA gel electrophoresis on next Monday’s lab session.
 {{:Team:Newcastle/Footer}}
 {{:Team:Newcastle/Right}}

Team:Newcastle/Labwork/24 July 2009

From 2009.igem.org