Team:TUDelft/24 August 2009

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='''24 August 2009'''=
='''24 August 2009'''=
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Transformaltion of friday 21-08-2009 looked good. On each plate there were 80-90 kolonies
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===Sriram===
 +
Today I did the restriction of all the DNA I minipreped on friday. The gel image below shows the restricted samples.
 +
 
 +
[[Image:gel240809-Delay Assembly1-8.jpg|thumb|center|550px]]
 +
 
 +
Then I also ligated and transformed the assemblies for riboregulator [5. pTet + Lock3c (Chloramphenicol backbone), 6. cI + Double Terminator (Chloramphenicol backbone), 7. λp-in + RBS-GFP-Double Term (Chloramphenicol backbone), 8. pLacI + key3c (Amp-Kan backbone)]and stopped the negative cascade assembly since Daniel's backup plan for it is progressing very well.
 +
 
 +
Since Daniel needed the λp-GFP (BBa_S03335) for his assembly in Chloramphenicol backbone, I did that assembly as well.
===Daniel===
===Daniel===
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 +
Transformaltion of friday 21-08-2009 looked good. On each plate there were 80-90 colonies
Digestion of assemblies in order to do the second round of assembly.
Digestion of assemblies in order to do the second round of assembly.
Gel 1% (left) for Calin´s PCR and 2% (right) for my digestions and Calin´s PCR
Gel 1% (left) for Calin´s PCR and 2% (right) for my digestions and Calin´s PCR
   
   
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[[Image:Gel240809.jpg|600px]]
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[[Image:Gel240809.jpg|550px]]
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'''Right Gel (2%)'''
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'''Left Gel (2%)'''
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{| border="1" align="center"
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| Well || Assembly || Expected Plasmid Size || Status
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|- align="center"
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| 1 || [http://www.eurogentec.com/EGT/Images/RESALES/Electrophoresis/Regular%20DNA%20Ladder/7-SmartLadder.jpg DNA Ladder] ||  || <font color=limegreen>&#10004;</font>
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|- align="center"
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| 2 || col PCR 1 || 1616  || <font color=red>&#10006;</font>
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|- align="center"
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| 3 || col PCR 2 || 1616  || <font color=red>&#10006;</font>
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|- align="center"
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| 4 || col PCR 3 || 1616  || <font color=red>&#10006;</font>
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|- align="center"
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| 5 || col PCR 4 ||  1616 || <font color=red>&#10006;</font>
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|- align="center"
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| 6 || col PCR 5 || 1616  || <font color=red>&#10006;</font>
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|- align="center"
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| 7 || col PCR 6 || 1616  ||  <font color=red>&#10006;</font>
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|- align="center"
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| 8 || [http://www.eurogentec.com/EGT/Images/RESALES/Electrophoresis/Regular%20DNA%20Ladder/7-SmartLadder.jpg DNA Ladder] ||  || <font color=limegreen>&#10004;</font>
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|}
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 +
'''Right Gel (1%)'''
{| border="1" align="center"
{| border="1" align="center"
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| 6 || 1A || 1076 || ?
| 6 || 1A || 1076 || ?
|- align="center"
|- align="center"
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| 7 || PCR 1 ||   ||
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| 7 || col PCR 1 || 1616 || <font color=red>&#10006;</font>
|- align="center"
|- align="center"
-
| 8 || PCR 2 ||   ||
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| 8 || col PCR 2 || 1616 || <font color=red>&#10006;</font>
|- align="center"
|- align="center"
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| 9 || PCR 3 ||   ||
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| 9 || col PCR 3 || 1616 || <font color=red>&#10006;</font>
|- align="center"
|- align="center"
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| 10 || PCR 4 ||   ||
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| 10 || col PCR 4 || 1616  || <font color=red>&#10006;</font>
|- align="center"
|- align="center"
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| 11 || PCR 5 ||   ||
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| 11 || col PCR 5 || 1616  || <font color=red>&#10006;</font>
|- align="center"
|- align="center"
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| 12 || PCR 6 ||   ||  
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| 12 || col PCR 6 || 1616  || <font color=red>&#10006;</font>
|}
|}
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We got the oligo for the two locks and keys I designed.   
We got the oligo for the two locks and keys I designed.   
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{{Template:TUDelftiGEM2009_end}}
{{Template:TUDelftiGEM2009_end}}

Latest revision as of 20:23, 20 October 2009

Lab Notebook

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24 August 2009

Sriram

Today I did the restriction of all the DNA I minipreped on friday. The gel image below shows the restricted samples.

Gel240809-Delay Assembly1-8.jpg

Then I also ligated and transformed the assemblies for riboregulator [5. pTet + Lock3c (Chloramphenicol backbone), 6. cI + Double Terminator (Chloramphenicol backbone), 7. λp-in + RBS-GFP-Double Term (Chloramphenicol backbone), 8. pLacI + key3c (Amp-Kan backbone)]and stopped the negative cascade assembly since Daniel's backup plan for it is progressing very well.

Since Daniel needed the λp-GFP (BBa_S03335) for his assembly in Chloramphenicol backbone, I did that assembly as well.

Daniel

Transformaltion of friday 21-08-2009 looked good. On each plate there were 80-90 colonies

Digestion of assemblies in order to do the second round of assembly. Gel 1% (left) for Calin´s PCR and 2% (right) for my digestions and Calin´s PCR

Gel240809.jpg


Left Gel (2%)

Well Assembly Expected Plasmid Size Status
1 [http://www.eurogentec.com/EGT/Images/RESALES/Electrophoresis/Regular%20DNA%20Ladder/7-SmartLadder.jpg DNA Ladder] ✔
2 col PCR 1 1616 ✖
3 col PCR 2 1616 ✖
4 col PCR 3 1616 ✖
5 col PCR 4 1616 ✖
6 col PCR 5 1616 ✖
7 col PCR 6 1616 ✖
8 [http://www.eurogentec.com/EGT/Images/RESALES/Electrophoresis/Regular%20DNA%20Ladder/7-SmartLadder.jpg DNA Ladder] ✔

Right Gel (1%)

Well Assembly Expected Plasmid Size Status
1 [http://www.eurogentec.com/EGT/Images/RESALES/Electrophoresis/Regular%20DNA%20Ladder/7-SmartLadder.jpg DNA Ladder] ✔
2 4A 824  ?
3 5A 1040 ✔
4 2A 214  ?
5 3A 183  ?
6 1A 1076  ?
7 col PCR 1 1616 ✖
8 col PCR 2 1616 ✖
9 col PCR 3 1616 ✖
10 col PCR 4 1616 ✖
11 col PCR 5 1616 ✖
12 col PCR 6 1616 ✖

Prepare IPTG 1M for further induction. I tried to do an experiment with 1A which is GFP under control of PLacI however the culture glows even though there is no IPTG induction.

We got the oligo for the two locks and keys I designed.

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