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Team:Paris/Production overview
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| - | In particular the system called Tol-Pal consisted of five proteins, TolA, TolB, TolQ, TolR and Pal<sup><span id="1">[[Team:Paris/ | + | In particular the system called Tol-Pal consisted of five proteins, TolA, TolB, TolQ, TolR and Pal<sup><span id="1">[[Team:Paris/Production_overview#References|[3]]]</span></sup><sup><span id="1">[[Team:Paris/Production_overview#References|[4]]]</span></sup>. This complex allows to maintain the integrity of the membrane. Studies showed that if we destabilize this system, we also destabilize the membrane, leading then a production of vesicles. But when the membrane of the bacteria stays for such a long time in this state of destabilization, the bacteria produces too many vesicles and go in state of lysis<sup><span id="1">[[Team:Paris/Production_overview#References|[4]]]</span></sup>. |
What is Tol-Pal complex ? | What is Tol-Pal complex ? | ||
| - | The five proteins organised this complex<sup><span id="1">[[Team:Paris/ | + | The five proteins organised this complex<sup><span id="1">[[Team:Paris/Production_overview#References|[5]]]</span></sup>. |
The TolA/Q/R proteins form a protein complex in the inner membrane. TolB is a periplasmic protein associated with Pal, a lipoprotein. Pal is anchored to the outer membrane and interacts with the peptidoglycan layer. There are interactions with TolA–Pal and TolA–TolB. | The TolA/Q/R proteins form a protein complex in the inner membrane. TolB is a periplasmic protein associated with Pal, a lipoprotein. Pal is anchored to the outer membrane and interacts with the peptidoglycan layer. There are interactions with TolA–Pal and TolA–TolB. | ||
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The first strategy is the knock out of tol/pal gene witch destabilizes the membrane. It's an active system, whereas the use of conditional mutant is a passive system. <font color=yellow>Que veux tu dire par actif et passif? Il faut expliquer</font> | The first strategy is the knock out of tol/pal gene witch destabilizes the membrane. It's an active system, whereas the use of conditional mutant is a passive system. <font color=yellow>Que veux tu dire par actif et passif? Il faut expliquer</font> | ||
| - | A previous study<sup><span id="1">[[Team:Paris/ | + | A previous study<sup><span id="1">[[Team:Paris/Production_overview#References|[5]]]</span></sup> focused on the development of a gene expression system able to induce production of large amounts of OMVs. They used different domains of two protein of Tol-Pal system. This team <sup><span id="1">[[Team:Paris/Production_overview#References|[5]]]</span></sup> send us their plasmid and we were able to begin our work quickly. |
| - | To achieve our goal, we decided to take advantage of the second domain of TolR (TolRII). <font color=yellow> Tu ne peux pas dire ca sans expliquer d'abord qu'il ya plusieurs domaines dans TolR et quelles sont leur fonctions... Il faut expliquer pourquoi ca peut être intéressant d'exprimer uniquement des domaines de TolR ou TolA; dire qui a déjà fait ca et quels ont été leur résultats... Il faut aussi expliquer pourquoi dans les constructions on utilise ompAS</font> We don’t use the third domain of TolA because, it doesn’t work so well and TolAIII have lot of PstI domain in his sequence. In order to achieve our project, we will over express specifically designed biobricks containing TolRII fused with OmpA signal which allows it to migrate in the periplasm<sup><span id="1">[[Team:Paris/ | + | To achieve our goal, we decided to take advantage of the second domain of TolR (TolRII). <font color=yellow> Tu ne peux pas dire ca sans expliquer d'abord qu'il ya plusieurs domaines dans TolR et quelles sont leur fonctions... Il faut expliquer pourquoi ca peut être intéressant d'exprimer uniquement des domaines de TolR ou TolA; dire qui a déjà fait ca et quels ont été leur résultats... Il faut aussi expliquer pourquoi dans les constructions on utilise ompAS</font> We don’t use the third domain of TolA because, it doesn’t work so well and TolAIII have lot of PstI domain in his sequence. In order to achieve our project, we will over express specifically designed biobricks containing TolRII fused with OmpA signal which allows it to migrate in the periplasm<sup><span id="1">[[Team:Paris/Production_overview#References|[4]]]</span></sup>. So Tol-Pal system will become bad and the membrane integrity will be destabilised. Lot of vesicle could be creating. |
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====References==== | ====References==== | ||
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<li> [[Team:Paris/Production_overview#1 | ^]]Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. McBroom AJ & Kuehn MJ 2007 - [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=17163978 17163978]</li> | <li> [[Team:Paris/Production_overview#1 | ^]]Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. McBroom AJ & Kuehn MJ 2007 - [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=17163978 17163978]</li> | ||
<li> [[Team:Paris/Production_overview#2 | ^]]Biogenesis of bacterial membrane vesicles. Deatherage BL & Cookson BT 2009 - [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=19432795 19432795]</li> | <li> [[Team:Paris/Production_overview#2 | ^]]Biogenesis of bacterial membrane vesicles. Deatherage BL & Cookson BT 2009 - [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=19432795 19432795]</li> | ||
Revision as of 17:19, 19 October 2009
iGEM > Paris > Vesicle production system > Overview
Contents |
Overview
Introduction
Several gram-negative bacteria - including E. coli - have been shown to produce vesicles for various hypothetical reasons[1][2] (stress response, host-pathogen interaction...). In our project, we want to optimize vesicle production to develop a long distance communication system between gram-negative bacteria. Outer membrane vesicles (OMVs) production can be enhanced through the destabilization of the outer-membrane. We found in the literature that the Tol/Pal system could be a good target for this purpose[3]. The Tol/Pal system of Escherichia Coli is involved in anchoring the outer- to the inner-membrane and to the peptidoglycan layer. It is thus essential in maintaining membrane integrity. The system is composed of five membrane proteins (TolA, TolB, TolQ, TolR and Pal) associating in two complexes.[4][5]
See Tol/Pal part for more information and why we choose this system. Strategy and Construction part explains our aim in this OMV production system.
A. Tol/Pal
E. Coli is gram-. Its membrane is complex included: the inner membrane and the outer membrane. Between both, there is a layer of peptidoglycan. The outer membrane presents lipo-polysaccharides (LPS). We find also porins and other proteins. There are receivers for the entrance of nourishing elements, receivers in pili ( bacterial conjugation), receivers where settles bacteriophage. It has properties of selective permeability, protection and support. This complex of proteins is in place to maintain the stability between the inner membrane and the outer membrane.
In particular the system called Tol-Pal consisted of five proteins, TolA, TolB, TolQ, TolR and Pal[3][4]. This complex allows to maintain the integrity of the membrane. Studies showed that if we destabilize this system, we also destabilize the membrane, leading then a production of vesicles. But when the membrane of the bacteria stays for such a long time in this state of destabilization, the bacteria produces too many vesicles and go in state of lysis[4].
What is Tol-Pal complex ?
The five proteins organised this complex[5]. The TolA/Q/R proteins form a protein complex in the inner membrane. TolB is a periplasmic protein associated with Pal, a lipoprotein. Pal is anchored to the outer membrane and interacts with the peptidoglycan layer. There are interactions with TolA–Pal and TolA–TolB.
B. Our strategy
We want to destabilize the outer membrane to create outer membrane vesicles (OMVs).
The first strategy is the knock out of tol/pal gene witch destabilizes the membrane. It's an active system, whereas the use of conditional mutant is a passive system. Que veux tu dire par actif et passif? Il faut expliquer
A previous study[5] focused on the development of a gene expression system able to induce production of large amounts of OMVs. They used different domains of two protein of Tol-Pal system. This team [5] send us their plasmid and we were able to begin our work quickly.
To achieve our goal, we decided to take advantage of the second domain of TolR (TolRII). Tu ne peux pas dire ca sans expliquer d'abord qu'il ya plusieurs domaines dans TolR et quelles sont leur fonctions... Il faut expliquer pourquoi ca peut être intéressant d'exprimer uniquement des domaines de TolR ou TolA; dire qui a déjà fait ca et quels ont été leur résultats... Il faut aussi expliquer pourquoi dans les constructions on utilise ompAS We don’t use the third domain of TolA because, it doesn’t work so well and TolAIII have lot of PstI domain in his sequence. In order to achieve our project, we will over express specifically designed biobricks containing TolRII fused with OmpA signal which allows it to migrate in the periplasm[4]. So Tol-Pal system will become bad and the membrane integrity will be destabilised. Lot of vesicle could be creating.
If bacteria stay in this conformation, there is lysis. We try to create an ON/OFF system to stop the vesicles creation.
In the same framework, we could also over express various Tol ligand (like colicin) to destabilize the membrane. But it doesn’t work. tu ne peux pas faire une affirmation comme ca sans aucune explication ni référence...
References
