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|[[Team:Groningen/Literature#Morris1999|Morris 1999]],[[Team:Groningen/Literature#Ngu2006|Ngu 2006]],[[Team:Groningen/Literature#Singh2008|Singh 2008]], [[Team:Groningen/Literature#Merrifield2004|Merrifield 2004]]
|[[Team:Groningen/Literature#Morris1999|Morris 1999]],[[Team:Groningen/Literature#Ngu2006|Ngu 2006]],[[Team:Groningen/Literature#Singh2008|Singh 2008]], [[Team:Groningen/Literature#Merrifield2004|Merrifield 2004]], [[Team:Groningen/Literature#Ngu2009|Ngu 2009]]
|[[Team:Groningen/Literature#Deng2007|Deng 2007]]
|[[Team:Groningen/Literature#Deng2007|Deng 2007]]
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;Ngu 2006 {{anchor|Ngu2006}}
;Ngu 2006 {{anchor|Ngu2006}}
:Thanh T. Ngu, M. Stillman (April 2006). "[ Arsenic Binding to Human Metallothionein]". ''J. Am. Chem. Soc'' '''128 (38)''': 12473–12483
:Thanh T. Ngu, M. Stillman (April 2006). "[ Arsenic Binding to Human Metallothionein]". ''J. Am. Chem. Soc'' '''128 (38)''': 12473–12483
;Ngu 2009 {{anchor|Ngu2009}}
:Thanh T. Ngu, J. A. Lee ''et al''. (April 2009). "[ Arsenic Metalation of Seaweed ''Fucus vesiculosus'' Metallothionein: The importance of the Interdomain Linker in Metallothionein]". ''Biochemistry'' '''48''': 8806–8816
;Nicholls, H2008{{anchor|Nicholls, H2008}}
;Nicholls, H2008{{anchor|Nicholls, H2008}}

Revision as of 15:15, 20 October 2009


Buoyancy related literature:

Our metal related literature by subject:

Cu Zn As Cd Sb Hg
Importers GlpF Meng 2004, Rosen 2009 Meng 2004
HmtA Lewinson 2009 Lewinson 2009
Exporters ArsB Tisa 1989, Carlin 1995,

Dey 1995 Rosen 1996, Meng 2004, Summers 2009

Tisa 1989, Carlin 1995, Rosen 1996, Meng 2004, Summers 2009
Accumulators ArsR Carlin 1995, Rosen 1996, Chen 1997, Kostal 2004, Rensing 2005, Summers 2009 Carlin 1995, Rosen 1996, Summers 2009
ArsD Chen 1997, Lin 2007-1/2, Summers 2009 Chen 1997, Lin 2007-1/2, Summers 2009
SmtA Shi 1992 Shi 1992, Turner 1995, Robinson 2001, Blindauer 2002 Shi 1992 Shi 1992
MymT Gold 2008
MT Morris 1999,Ngu 2006,Singh 2008, Merrifield 2004, Ngu 2009 Deng 2007 Chen1998
Unclassified Brady 1994 Chang 1998, Blindauer 2001, Kao 2008 Brady 1994, Chang 1998, Deng 2008
Promoters Mills 1994 , Khunajakr 1999, Liu 2004, Moore 2005, Ettema2006 , Liu 2006, Liu 2008, Catini 2008, Nawapan 2009 Thelwell 1998, Liu 2004, Moore2005, Hirose 2006, Kloosterman 2008 Summers 2009 Liu 2004, Moore 2005
Alon 2007
Ensarija Star (soft edges).png Uri Alon (2007). Introduction to systems biology: design principles of biological circuits Chapman & Hall/CRC. ISBN 978-1-58488-642-6
Baldwin 1995
W.W. Baldwin, Richard Myer, Nicole Powell, et al (August 1995). "Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium". Archives of Microbiology 164(2): 155-157
Beltramini 1981


Beyer 2004
Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale". Molecular & Cellular Proteomics 3: 1083-1092
Bhutkar, A2005
Bhutkar, A(2005). 'Synthetic Biology: Navigating the Challenges Ahead".The journal of Biolaw and Business. 2(8):
Blancato 2006
Blancato VS, Magni C, Lolkema JS. (October 2006). "Functional characterization and Me ion specificity of a Ca-citrate transporter from Enterococcus faecalis". FEBS journal 273(22): 5121-5130
Blindauer 2002
Claudia A. Blindauer, Mark D. Harrison, Andrea K. Robinson, et al (2002). "Multiple bacteria encode metallothioneins and SmtA-like zinc fingers". Molecular Microbiology 45(5): 1421-1432
Blindauer 2001
Blindauer CA, Harrison MD, et al (2001). "A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity.". Proc Natl Acad Sci USA. 98(17): ):9593-9598
Bowen 1965
C.C. Bowen and T.E. Jensen ( March 1965). "Blue-Green Algae: Fine Structure of the Gas Vacuoles". Science 147(3664): 1460 - 1462
Busenlehner 2003
Busenlehner L.S., Pennella M.A. & Giedroc D.P., (June 2003) "The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance". FEMS Microbiology Reviews, 2003, 27, 131-143.
Brady 1994
Brady D, Rose PD, Duncan JR. (1994). "The use of hollow fiber cross-flow microfiltration in bioaccumulation and continuous removal of heavy metals from solution by Saccharomyces cerevisiae.". Biotechnol Bioeng. 44(11):1362-1366
Bylund 1991
J.E. Bylund, M.A. Haines, K. Walsh, et al (September 1991). "Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli". Journal of Bacteriology 173(17): 5396-5402
Cadosch 2008
Cadosch D, Meagher J, Gautschi OP, Filgueira L. (December 2008). "Uptake and intracellular distribution of various metal ions in human monocyte-derived dendritic cells detected by Newport Green DCF diacetate ester". Journal Neurosci Methods. 178(1):182-187
Catini 2008
Cantini F., Banci L. & Solioz M., (October 2008) "The copper-responsive repressor CopR of Lactococcus lactis is a ‘winged helix’ protein". Biochem. J., 2009, 417, 493–499.
Carlin 1995
Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance". Journal of Bacteriology 177(4): 981-986
Chen 1997
Ensarija Star (soft edges).png Yanxiang Chen and Barry P. Rosen (May 1997). "Metalloregulatory Properties of the ArsD Repressor". The Journal of Biological Chemistry 272(22): 14257-14262
Chen 1997-2
Chen S, Wilson DB. (1997). "Genetic engineering of bacteria and their potential for Hg2+ bioremediation ". Biodegradation 8(2): 97-103
Chen 1998
Chen S, Kim E, Shuler ML, Wilson DB. (1998). "Hg2+ removal by genetically engineered Escherichia coli in a hollow fiber bioreactor". Biotechnol Prog. 14(5):667-671
Chen 2008
Chen P.R. & He C., (March 2008) "Selective recognition of metal ions by metalloregulatory proteins, Current Opinion in Chemical Biology". 2008, 12, 214–221.
Chang 1998
Chang CC, Liao WF, Huang PC. (1998). "Cysteine contributions to metal binding preference for Zn/Cd in the beta-domain of metallothionein". Protein Eng. 11(1):42-46
Chopra, PK, A2006
Chopra, PK, A(2006). "Engineering life through Synthetic Biology".In silico Biology. 0038(6):
Cleland, CE, et al.2002
Cleland, CE, et al.(2002). "Defining 'life'".Origins of Life and Evolution of the Biosphere. 4(32):387-393
Deng 2003
Deng X, Li QB, Lu YH, Sun DH, Huang YL, Chen XR. (2003). "Bioaccumulation of nickel from aqueous solutions by genetically engineered Escherichia coli.". Water Res. 37(10):2505-2511
Deng 2007
Deng X, Yi XE, Liu G. (2007). "Cadmium removal from aqueous solution by gene-modified Escherichia coli JM109". Journal Hazard Mater. 139(2):340-344
Deng 2008
Deng X, Hu ZL, Yi XE. (May 2008). "Continuous treatment process of mercury removal from aqueous solution by growing recombinant E. coli cells and modeling study". Journal Hazard Mater. 153(1-2):487-492
Deplazes, A2009
Deplazes, A(2009). "Piecing together a puzzle An exposition of synthetic biology".Embo Reports. 5(10):428-432
Dey 1995
Saibal Dey, Barry P. Rosen (1995). "Dual Mode of Energy Coupling by the Oxyanion Translocating ArsB Protein". JOURNAL OF BACTERIOLOGY 177(2): 385–389
Ettema 2006
Thijs J. G. Ettema, Arie B. Brinkman et al (2006). "Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2". Microbiology 152: 1969-1979
Fowler 1987
Fowler BA. (1987). "Intracellular compartmentation of metals in aquatic organisms: roles in mechanisms of cell injury". Environ Health Perspect. 7(1): 121-128
Fosmire 1990
Fosmire GA. (1990). "Zinc toxicity". American Society for Clinical Nutrition. 5l: 225-227
Fu, DX, et al.2000
Fu, DX, et al.(2000). "Structure of a glycerol-conducting channel and the basis for its selectivity".Science. 5491(290):481-486
Gilchrist 2007
Michael A. Gilchrist (2007). "Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns". Molecular Biology and Evolution 24(11): 2362-2372
Gold 2008
Gold B, Deng H, et al(2008). "Identification of a copper-binding metallothionein in pathogenic mycobacteria". Nat Chem Biol. 4(10): 609-616
Goudar 1999
Chetan T. Goudara, Jagadeesh R. Sonnadb and Ronald G. Duggleby (January 1999). "Parameter estimation using a direct solution of the integrated Michaelis-Menten equation". Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1429(2): 377-383
Guven 2007
Basak Guven and Alan Howarda (September 2007). "Identifying the critical parameters of a cyanobacterial growth and movement model by using generalised sensitivity analysis". Ecological Modelling 207(1): 11-21
Heller, KB, et al.1980
Heller, KB, et al.(1980). "Substrate-Specificity and Transport-Properties of the Glycerol Facilitator of Escherichia-Coli".Journal of Bacteriology. 1(144):274-278
Hirose 2006
Hirose K, Ezaki B, Tong L Nakashima S, et al (August 2005) "Diamide stress induces a metallothionein BmtA through a repressor BxmR and is modulated by Zn-inducible BmtA in the cyanobacterium Oscillatoria brevis". Toxicology Letters, 2006, 163, 250–256.
Hoefnagel 2002
M.H.N. Hoefnagel, A. van der Burgt, D.E. Martens, et al (March 2002). "Time Dependent Responses of Glycolytic Intermediates in a Detailed Glycolytic Model of Lactococcus Lactis During Glucose Run-Out Experiments". Molecular Biology Reports 29: 157-161
Holland 2009
Daryl P. Holland, Anthony E. Walsby (January 2009). "Digital recordings of gas-vesicle collapse used to measure turgor pressure and cell–water relations of cyanobacterial cells ". Journal of Microbiological Methods 77: 214-224
Kao 2008
Kao WC, Huang CC, Chang JS (October 2008). "Biosorption of nickel, chromium and zinc by MerP-expressing recombinant Escherichia coli.". J Hazard Mater. 158(1): 100-106
Kelle, A2009
Kelle, A(2009). "Synthetic biology and biosecurity From low levels of awareness to a comprehensive strategy".Embo Reports. 10):S23-S27
Kelly 2009
Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, et al (March 2009). "Measuring the activity of BioBrick promoters using an in vivo reference standard". Journal of Biological Engineering 3: 4
Khunajakr 1999
Nongpanga Khunajakr, Chun-Qiang Liu et al (March 1999). "A plasmid-encoded two-component regulatory system involved in copper-inducible transcription in Lactococcus lactis". Gene229(1-1): 229-235
Klaassen 1994
Klaassen, Curtis D., Supratim Choudhuri, James M. McKim, Jr., Lois D. Lehman-McKeeman, and William C. Kershaw (1994). "In Vitro and In Vivo Studies on the Degradation of Metallothionein". Environ. Health Perspect 102(3): 141-146.

Kloosterman 2008
Tomas G. Kloosterman, Robert M. Witwicki et al (2008). "Opposite Effects of Mn2+ and Zn2+ on PsaR-Mediated Expression of the Virulence Genes pcpA, prtA, and psaBCA of Streptococcus pneumonia". J Bacterio190(15): 5382–5393
Kostal 2004
Ensarija Star (soft edges).png Jan Kostal, Rosanna Yang, Cindy H. Wu, et al (August 2004). "Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR". Applied and Environmental Microbiology 70(8): 4582–4587
Lewinson 2009
Lewinson O, Lee AT, Rees DC. (2009). "A P-type ATPase importer that discriminates between essential and toxic transition metals". PNAS 106(12): 4677-4682
Li 1998
Ensarija Star (soft edges).png Ning Li and Maura C. Cannon (May 1998). "Gas Vesicle Genes Identified in Bacillus megaterium and Functional Expression in Escherichia coli". Journal of Bacteriology 180(9): 2450–2458
Lin 2007-1
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (April 2007). "ArsD Residues Cys12, Cys13, and Cys18 Form an As(III)-binding Site Required for Arsenic Metallochaperone Activity". The Journal of Biological Chemistry 282(23): 16783–16791
Lin 2007-2
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase". Journal of Bioenergetics and Biomembranes 39: 453-458
Liu 2004
Tong Liu, Susumu Nakashima et al (April 2004) "A Novel Cyanobacterial SmtB/ArsR Family Repressor Regulates the Expression of a CPx-ATPase and a Metallothionein in Response to Both Cu(I)/Ag(I) and Zn(II)/Cd(II)". The Journal of Biological Chemistry, 2004, Vol. 279, No. 17, 17810–17818.
Liu 2006
Tong Liu Arati Ramesh et al(December 2006). "CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator". Nature Chemical Biology 3: 60-68
Liu 2008
Tong Liu, Xiaohua Chen, Zhen Ma, et al (September 2008) "A CuI-sensing ArsR family Metal Sensor Protein with a Relaxed Metal Selectivity Profile". Biochemistry, 2008, 47(40), 10564–10575.
Lundstrom (2006)
Lundstrom, K. (2006). “Structural genomics for membrane proteinsCell. Mol. Life Sci. 63: 2597–2607.
Meng, YL, et al.2004
Meng, YL, et al.(2004). ” As(III) and Sb(III) uptake by G1pF and efflux by ArsB in Escherichia coli".Journal of Biological Chemistry. 18(279):18334-18341
Merrifield 2004
M. E. Merrifield, T. Ngu, M. J. Stillman et al (September 2004). "Arsenic binding to Fucus vesiculosus metallothionein.". Biochemical and Biophysical Research Communications 324 : 127–132
Mills 1994
Scott D. Mills Chun-Keun Lim and Donald A. Cooksey (1994). "Purification and characterization of CopR, a transcriptional activator protein that binds to a conserved domain (cop box) in copper- inducible promoters of Pseudomonas syringae". Molecular and General Genetics MGG 244(4): 1432-1874
Mindlin, SZ, et al.2002
Mindlin, SZ, et al.(2002). "Horizontal transfer of mercury resistance genes in environmental bacterial populations".Molecular Biology. 2(36):160-170
Moore 2005
Charles M. Moore, Ahmed Gaballa et al (May 2005). "Genetic and physiological responses of Bacillus subtilis to metal ion stress". Molecular Microbiology57(1): 27-40
Morris 1999
C.A. Morris, B. Nicolaus, V. Sampson et al (March 1999). "Identification and characterization of a recombinant metallothionein protein from a marine alga, Fucus vesiculosus". The Biochemical journal 338(2): 553-560
Nawapan 2009
Sirikan Nawapan, Nisanart Charoenlap et al (August 2009). "Functional and Expression Analyses of the cop Operon, Required for Copper Resistance in Agrobacterium tumefaciens". American Society for Microbiology 191(16): 5159-5168
Neves 1999
Ana Rute Neves, Ana Ramos, Marta C. Nunes, et al (1999). "In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis". Biotechnology and Bioengineering 64: 200-212
Ngu 2006
Thanh T. Ngu, M. Stillman (April 2006). "Arsenic Binding to Human Metallothionein". J. Am. Chem. Soc 128 (38): 12473–12483
Ngu 2009
Thanh T. Ngu, J. A. Lee et al. (April 2009). "Arsenic Metalation of Seaweed Fucus vesiculosus Metallothionein: The importance of the Interdomain Linker in Metallothionein". Biochemistry 48: 8806–8816
Nicholls, H2008
Nicholls, H(2008). "Synthetic biology".Lancet. S45-S49
Nouri, A, et al.2009
Nouri, A, et al.(2009). "Proliferation-resistant biotechnology: an approach to improve biological security".Nature Biotechnology. 3(27):234-236
Pennella 2005
Pennella M.A. & Giedroc D.P., (August 2005) "Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulator". BioMetals, 2005, 18, 413–428.
Poole 1977
R.K. Poole (1977). "Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12". Journal of General Microbiology 98: 177-186
Porquet, A, et al.2007
Porquet, A, et al.(2007). “Structural evidence of the similarity of Sb(OH)(3) and As(OH)(3) with glycerol: Implications for their uptake".Chemical Research in Toxicology. 9(20):1269-1276
Rawlings 1994
RAWLINGS, D E. and KUSANO, T (1994). “Molecular Genetics of Thiobacillus ferrooxidans”. ‘’MICROBIOLOGICAL REVIEWS’’, ‘’’58 (1): 39-55’’’

Rensing 2005
Christopher Rensing (June 2005). "Form and Function in Metal-Dependent Transcriptional Regulation: Dawn of the Enlightenment". Journal of Bacteriology 187(12): 3909–3912
Robinson 2001
Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "Microbial Metallothioneins". Advances in Microbial Physiology 44: 183-213
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Barry P. Rosen (August 1996). "Bacterial resistance to heavy metals and metalloids". Journal of Biological Inorganic Chemistry 1(4): 273-277
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Schwartz 2008
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Shi 1992
Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein". FEBS Letters 303(2-3): 159-163
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Anne O. Summers (April 2009). "Damage control: regulating defenses against toxic metals and metalloids". Current Opinion in Microbiology 12(2): 138-144
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Thelwell C., Robinson N.J. & Turner-Cavet J.S., "An SmtB-like repressor from Synechocystis PCC 6803 regulates a zinc exporter". Proc. Natl. Acad. Sci. USA, 1998, Vol. 95, 10728–10733.
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Louis S. Tisa and Barry P. Rosen (January 1990). "Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein". The journal of biological chemistry 265(1): 190-194
Turner 1995
Jennifer S. Turner, Nigel J. Robinson and Amit Gupta (March 1995). "Construction of Zn2+/Cd2+-tolerant cyanobacteria with a modified metallothionein divergon: Further analysis of the function and regulation of smt". Journal of Industrial Microbiology and Biotechnology 14(3-4): 259-264
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A.E. Walsby (April 1979). "Average thickness of the gas vesicle wall in Anabaena flos-aquae". Journal of Molecular Biology 129(2): 279-285
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