User:DavidC/14 September 2009
From 2009.igem.org
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+ | === Monday the 14th === | ||
+ | |||
+ | ==== Ligation: samples digested on the 13th of September ==== | ||
+ | |||
+ | Ligation pairs: plasmid / insert : <br> | ||
+ | |||
+ | BBa_B0014 / BBa_C0012 <br> | ||
+ | |||
+ | First report: <br> | ||
+ | Plasmid = 2µL <br> | ||
+ | Insert = 5µL <br> | ||
+ | |||
+ | Second report: <br> | ||
+ | Plasmid = 1,5µL <br> | ||
+ | Insert = 5µL <br> | ||
+ | |||
+ | Third report: <br> | ||
+ | Plasmide = 1µL <br> | ||
+ | Insert = 7µL <br> | ||
+ | |||
+ | ==== NEB Enzymes ==== | ||
+ | |||
+ | For each samples add sterilized water to obtain a maximum volume equals to 8µL. <br> | ||
+ | Ligation mix (NEB): <br> | ||
+ | 1,5µL T4 ligase + 1,5µL T4 ligase buffer. <br> | ||
+ | Add 2µL / tube. <br> | ||
+ | Incubation 1h at RT. <br> | ||
+ | |||
+ | ==== TAKARA DNA ligation kit === | ||
+ | |||
+ | First report: | ||
+ | Solution A (Buffer) = 28µL <br> | ||
+ | Solution B (Enzyme) = 7µL <br> | ||
+ | Incubation 1h at 16°C. <br> | ||
+ | |||
+ | ==== Electroporation ==== | ||
+ | |||
+ | Electroporation cuvettes = 2mm ; inoculums of electrocompetent <i>E.coli</i> DH5alpha= 40µL; pulse = 2,5KVolt ; 1h of incubation. <br> | ||
+ | |||
+ | Spread 1mL of inoculums into a petri dish with LB + ampicillin (50mg/mL) (20/0,02mL). <br> | ||
+ | |||
+ | ==== PCR ==== | ||
+ | |||
+ | ==== D protein ==== | ||
+ | |||
+ | Primers: <br> | ||
+ | Forward : Préfixe ATG BBa <br> | ||
+ | Reverse : Prt D_Rv_Bal1 <br><br> | ||
+ | |||
+ | ADN : <br> | ||
+ | 1. Lambda bacteriophage; <br> | ||
+ | 2. Purified and amplified D protein. <br><br> | ||
+ | |||
+ | Cycles: <br> | ||
+ | 94°C 2minutes; <br> | ||
+ | (94°C 1 minute; <br> | ||
+ | 46°C 1 minutes; <br> | ||
+ | 72°C 1 minute(s)) X 35; <br> | ||
+ | 72°C 4 minutes; <br> | ||
+ | |||
+ | ==== Penton base from the adenovirus 5 ==== | ||
+ | |||
+ | Primers: <br> | ||
+ | Forward : ADV5Fw_Bal1 <br> | ||
+ | Reverse : ADV5Rv_Bal1 <br><br> | ||
+ | |||
+ | ADN : <br> | ||
+ | Purified and amplified penton base from plasmid coding for adenovirus 5. <br><br> | ||
+ | |||
+ | Cycles: <br> | ||
+ | 94°C 2minutes; <br> | ||
+ | (94°C 1 minute; <br> | ||
+ | 57,3°C 1 minutes; <br> | ||
+ | 72°C 2 minute(s)) X 35; <br> | ||
+ | 72°C 5 minutes; <br> | ||
+ | |||
+ | ==== DNA electrophoresis ==== | ||
+ | |||
+ | 85 Volt, 15 minutes. <br> | ||
+ | 105 Volt, 40 minutes. <br> | ||
+ | Ladder fermentas 1 Kb. <br><br> | ||
+ | |||
+ | Samples: Adenovirus penton base, D protein <br> | ||
+ | |||
+ | [[image:M1409.png|center]] | ||
+ | |||
+ | |||
+ | Interpretation: <br> | ||
+ | |||
+ | We obtain a small amplification for D protein on the sample 4. But other samples have bad results, we obtain to much DNA for samples 1 and 2 PCR, we also amplified the wrong DNA, maybe we use a bad temperature for primers annealing, finally sample 3 is negative. <br> |
Latest revision as of 14:39, 21 October 2009
Contents |
Monday the 14th
Ligation: samples digested on the 13th of September
Ligation pairs: plasmid / insert :
BBa_B0014 / BBa_C0012
First report:
Plasmid = 2µL
Insert = 5µL
Second report:
Plasmid = 1,5µL
Insert = 5µL
Third report:
Plasmide = 1µL
Insert = 7µL
NEB Enzymes
For each samples add sterilized water to obtain a maximum volume equals to 8µL.
Ligation mix (NEB):
1,5µL T4 ligase + 1,5µL T4 ligase buffer.
Add 2µL / tube.
Incubation 1h at RT.
= TAKARA DNA ligation kit
First report:
Solution A (Buffer) = 28µL
Solution B (Enzyme) = 7µL
Incubation 1h at 16°C.
Electroporation
Electroporation cuvettes = 2mm ; inoculums of electrocompetent E.coli DH5alpha= 40µL; pulse = 2,5KVolt ; 1h of incubation.
Spread 1mL of inoculums into a petri dish with LB + ampicillin (50mg/mL) (20/0,02mL).
PCR
D protein
Primers:
Forward : Préfixe ATG BBa
Reverse : Prt D_Rv_Bal1
ADN :
1. Lambda bacteriophage;
2. Purified and amplified D protein.
Cycles:
94°C 2minutes;
(94°C 1 minute;
46°C 1 minutes;
72°C 1 minute(s)) X 35;
72°C 4 minutes;
Penton base from the adenovirus 5
Primers:
Forward : ADV5Fw_Bal1
Reverse : ADV5Rv_Bal1
ADN :
Purified and amplified penton base from plasmid coding for adenovirus 5.
Cycles:
94°C 2minutes;
(94°C 1 minute;
57,3°C 1 minutes;
72°C 2 minute(s)) X 35;
72°C 5 minutes;
DNA electrophoresis
85 Volt, 15 minutes.
105 Volt, 40 minutes.
Ladder fermentas 1 Kb.
Samples: Adenovirus penton base, D protein
Interpretation:
We obtain a small amplification for D protein on the sample 4. But other samples have bad results, we obtain to much DNA for samples 1 and 2 PCR, we also amplified the wrong DNA, maybe we use a bad temperature for primers annealing, finally sample 3 is negative.