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Team:Groningen/Modelling/Characterization
From 2009.igem.org
(Difference between revisions)
(Added a plot of the Meng2004 fit.) |
m (Refactored refreshing of graphs.) |
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| Line 239: | Line 239: | ||
var E = computeCost(c,experiments); | var E = computeCost(c,experiments); | ||
var cBest = c, EBest = E; | var cBest = c, EBest = E; | ||
| + | for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | ||
// Show initial situation | // Show initial situation | ||
showOutputs('cur',E,c,dc); | showOutputs('cur',E,c,dc); | ||
showOutputs('',EBest,cBest); | showOutputs('',EBest,cBest); | ||
| - | + | refreshGraphs(); | |
| - | + | ||
// Set up iteration | // Set up iteration | ||
| Line 269: | Line 269: | ||
cBest = cNew; | cBest = cNew; | ||
EBest = ENew; | EBest = ENew; | ||
| - | |||
for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | for(var i in experiments) experiments[i].bestSolution = experiments[i].solution; | ||
| - | + | showOutputs('',EBest,cBest); | |
| + | refreshGraphs(); | ||
} | } | ||
| Line 282: | Line 282: | ||
} | } | ||
},1); | },1); | ||
| + | } | ||
| + | |||
| + | function refreshGraphs() { | ||
| + | document.getElementById('Meng2004Graph').refresh(); | ||
} | } | ||
Revision as of 10:49, 5 October 2009
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- Modelling
- DetailedModel
- Characterization
- Downloads
TODO: Talk about the devices we have and in what way we want to characterize them.
Uptake measurements
| Time (min) | ||||||
|---|---|---|---|---|---|---|
| 0 | 10 | 20 | 40 | 60 | ||
| As(III)exT(0) (µM) | 0 | x | ||||
| 10 | x | x | x | x | x | |
| 20 | x | |||||
| 50 | x | |||||
| 100 | x | |||||
To efficiently look at both time and concentration dependent processes we took samples as in the table on the right. Below we list all results, which have been used for fitting all necessary parameters.
TODO: List results. Take conversion from nmol/mg and mg/ml to µM and Vc/Vs into account.
| best | cur | gradient | solved | |
|---|---|---|---|---|
| v5/K5 | ||||
| v5 | ||||
| K5 | ||||
| k8/K7 | ||||
| k8 | ||||
| K7 | ||||
| tauBbeta4 | ||||
| tauB | ||||
| beta4 | ||||
| tauR | ||||
| beta1 | ||||
| E |
|
|
|
Loading graph...
