Team:Warsaw/Calendar-Main/27 July 2009

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(Difference between revisions)
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<li>set up liquid culture from cells transformed with repeated ligation, extract plasmid, digest with EcoRI and PstI, gel electrophoresis.</li></ul>  
<li>set up liquid culture from cells transformed with repeated ligation, extract plasmid, digest with EcoRI and PstI, gel electrophoresis.</li></ul>  
   
   
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<h3><div style="text-align: center;">Construction of RBS.3-llo </div></h3>
+
<h3><div style="text-align: center;">Construction of RBS.3-listeriolysin </div></h3>
<h4>Ania</h4>
<h4>Ania</h4>
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<li>Digest vector with RBS.3 with SpeI and PstI </li>
<li>Digest vector with RBS.3 with SpeI and PstI </li>
<li>Digest llo(wild type) and llo mutated with with XbaI and PstI </li>
<li>Digest llo(wild type) and llo mutated with with XbaI and PstI </li>
 +
<li>Extract the correct fragments from the gel</li>
 +
<li>Set up a ligation of RBS.3 and wild type llo (since the mutated version turned out not to be correct one)</li>
</ul>  
</ul>  
<p>Results:</p>
<p>Results:</p>
-
 
+
<img src="https://static.igem.org/mediawiki/2009/4/43/Ania_rbs3_llowt_llomut.jpg"></img>
<p>Comments:</p>
<p>Comments:</p>
The RBS.3 and wild type listeriolysin are correctly digested, the mutated listeriolysin is not digested, sequencing confirmed that we did not have the correct vesrion of mutated listeriolysin.  
The RBS.3 and wild type listeriolysin are correctly digested, the mutated listeriolysin is not digested, sequencing confirmed that we did not have the correct vesrion of mutated listeriolysin.  

Revision as of 14:15, 5 August 2009


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Cloning of the mgtc promoter into the pSB1A3 plasmid

Kamil


Tasks:

  • Reamplification of the mgtc promoter

Methods:

  • The PCR mix was prepared as follows: 5μl buffer B (EURx), 2μl 5mM dNTPs (EURx), 5μl forward starter, 5μl reverse starter, 2μl OptiTaq polymerase (EURx), the solution was topped up with H2O to the final volume of 50μl.
  • PCR programme:

     4min 95°C 
    (30s 95°C, 35s 58°C, 40s 72°C)x28
    10min 72°C
    ~ 4°C
  • The results were visualised with gel electrophoresis on 1% agarose gel.

Results:

  • Gel Electrophoresis:

From left:

  1. GeneRuler DNA Ladder Mix #SM0333 (Fermentas)
  2. 5μl of PCR mix

Conclusions:

  • [Borat]Great success![/Borat]

Assembly of endosomal detection operon

Marcin


Task 1:

  • Prepare the bacterial cultures for isolation of plasmids containing ligated biobricks

Preparation of bacterial cultures

  • Prepare LB medium with kanamycin
  • Add 3.5 ml of the medium to the probes
  • Add one bacterial colony to each probe
  • Breed the bacteria about 7 hours
  • Construction of K177012 operon1_part2

    Ania


    Tasks:

    • extract plasmid, digest with EcoRI and PstI, gel electrophoresis
    • set up liquid culture from cells transformed with repeated ligation, extract plasmid, digest with EcoRI and PstI, gel electrophoresis.

    Construction of RBS.3-listeriolysin

    Ania


    Tasks:

    • Digest vector with RBS.3 with SpeI and PstI
    • Digest llo(wild type) and llo mutated with with XbaI and PstI
    • Extract the correct fragments from the gel
    • Set up a ligation of RBS.3 and wild type llo (since the mutated version turned out not to be correct one)

    Results:

    Comments:

    The RBS.3 and wild type listeriolysin are correctly digested, the mutated listeriolysin is not digested, sequencing confirmed that we did not have the correct vesrion of mutated listeriolysin.

    April
    MTWTFSS
        1 2 3 4 5
    6 7 8 9 10 11 12
    13 14 15 16 17 18 19
    20 21 22 23 24 25 26
    27 28 29 30
    May
    MTWTFSS
            1 2 3
    4 5 6 7 8 9 10
    11 12 13 14 15 16 17
    18 19 20 21 22 23 24
    25 26 27 28 29 30 31
    June
    MTWTFSS
    1 2 3 4 5 6 7
    8 9 10 11 12 13 14
    15 16 17 18 19 20 21
    22 23 24 25 26 27 28
    29 30
    July
    MTWTFSS
        1 2 3 4 5
    6 7 8 9 10 11 12
    13 14 15 16 17 18 19
    20 21 22 23 24 25 26
    27 28 29 30 31
    August
    MTWTFSS
              1 2
    3 4 5 6 7 8 9
    10 11 12 13 14 15 16
    17 18 19 20 21 22 23
    24 25 26 27 28 29 30
    31
    September
    MTWTFSS
      1 2 3 4 5 6
    7 8 9 10 11 12 13
    14 15 16 17 18 19 20
    21 22 23 24 25 26 27
    28 29 30
    October
    MTWTFSS
          1 2 3 4
    5 6 7 8 9 10 11
    12 13 14 15 16 17 18
    19 20 21 22 23 24 25
    26 27 28 29 30 31