Team:Warsaw/Calendar-Main/8 July 2009

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Gradient PCR Pho

Kama


Tasks:

  • Amplification of phoP/phoQ

Methods:

  • PCR mixture's composition:

    1ul pfu buffer (Fermentas), 1ul MgSO4 (Fermentas), 0,5ul primers, 0,5ul dNTPs (10 mM), 0,25ul pfu turbo polymerase, 0,5ul template DNA from Listeria, optionally: 0,75ul DMSO, solution was topped up with H2O to 10ul.
  • PCR programs:
  • pho

    4min 95°C 
    (30s 95°C, 1min 45-55°C, 4min 72°C)x3
    (30s 95°C, 1min 55-60°C, 4min 72°C)x28
    10min 72°C
    ~ 7°C
  • Electrophoretic separation on 1% agarose gel

Results:

  • Gel (from left)
  1. control -
  2. 2-6 - samples (annealing temperature increases to from the left to the right)
  3. 7-11 - samples with DMSO (annealing temperature increases to from the left to the right)
  4. M - GeneRuler DNA Ladder Mix #SM0333 (Fermentas)

  5. Notes:







    April
    MTWTFSS
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    May
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    11 12 13 14 15 16 17
    18 19 20 21 22 23 24
    25 26 27 28 29 30 31
    June
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    8 9 10 11 12 13 14
    15 16 17 18 19 20 21
    22 23 24 25 26 27 28
    29 30
    July
    MTWTFSS
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    6 7 8 9 10 11 12
    13 14 15 16 17 18 19
    20 21 22 23 24 25 26
    27 28 29 30 31
    August
    MTWTFSS
              1 2
    3 4 5 6 7 8 9
    10 11 12 13 14 15 16
    17 18 19 20 21 22 23
    24 25 26 27 28 29 30
    31
    September
    MTWTFSS
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    7 8 9 10 11 12 13
    14 15 16 17 18 19 20
    21 22 23 24 25 26 27
    28 29 30
    October
    MTWTFSS
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    12 13 14 15 16 17 18
    19 20 21 22 23 24 25
    26 27 28 29 30 31